Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 537 | 0.67 | 0.653906 |
Target: 5'- gACGAcGUUCGgcaGCCAGGGCGgGGUg- -3' miRNA: 3'- -UGCU-CAAGUac-CGGUUCCGUgUCGug -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 627 | 0.74 | 0.272151 |
Target: 5'- gGCGGGUUgugcUGcGCCAAGGCGCucGGCGCg -3' miRNA: 3'- -UGCUCAAgu--AC-CGGUUCCGUG--UCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 1300 | 0.67 | 0.608431 |
Target: 5'- -gGAGUUCucccgcGUGGCCGcgaAGGC-UGGCACu -3' miRNA: 3'- ugCUCAAG------UACCGGU---UCCGuGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 2475 | 0.66 | 0.687825 |
Target: 5'- gACGcauAGU--GUGGCCAucaGCGCGGCGCu -3' miRNA: 3'- -UGC---UCAagUACCGGUuc-CGUGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 5318 | 0.74 | 0.272151 |
Target: 5'- cGCGAGcgCGUGGCCAcgcuggAGGCGaaguCAGCAa -3' miRNA: 3'- -UGCUCaaGUACCGGU------UCCGU----GUCGUg -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 6790 | 0.68 | 0.563298 |
Target: 5'- gACGAGUaCcgGGCCc--GCACGGCGg -3' miRNA: 3'- -UGCUCAaGuaCCGGuucCGUGUCGUg -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 7798 | 1.09 | 0.000948 |
Target: 5'- gACGAGUUCAUGGCCAAGGCACAGCACc -3' miRNA: 3'- -UGCUCAAGUACCGGUUCCGUGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 8066 | 0.67 | 0.619793 |
Target: 5'- cCGAGUcaggCAUGGCCGGuacauGaGCGgAGCGCa -3' miRNA: 3'- uGCUCAa---GUACCGGUU-----C-CGUgUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 8553 | 0.67 | 0.631167 |
Target: 5'- gGCGAGcucgUCAcGGCaggucuuGAGGuCGCGGCGCa -3' miRNA: 3'- -UGCUCa---AGUaCCGg------UUCC-GUGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 10554 | 0.74 | 0.262984 |
Target: 5'- cGCGAGUggCA-GGCgCAagaggcgaaggagcGGGCGCAGCACg -3' miRNA: 3'- -UGCUCAa-GUaCCG-GU--------------UCCGUGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 11896 | 0.81 | 0.090721 |
Target: 5'- cCGAGUUCAUGGCC-AGGCGCucCACg -3' miRNA: 3'- uGCUCAAGUACCGGuUCCGUGucGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 12256 | 0.66 | 0.710172 |
Target: 5'- aACGAGUUCAUGcGCgAccGGUGCAuggaacucGCACg -3' miRNA: 3'- -UGCUCAAGUAC-CGgUu-CCGUGU--------CGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 12710 | 0.67 | 0.619793 |
Target: 5'- gGCGAGgcCGgcGGCCGAGGgGaggUAGCGCa -3' miRNA: 3'- -UGCUCaaGUa-CCGGUUCCgU---GUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 13548 | 0.72 | 0.334238 |
Target: 5'- gACGGGUUCAgcaCCGAGGCGagcaaGGCGCg -3' miRNA: 3'- -UGCUCAAGUaccGGUUCCGUg----UCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 13596 | 0.66 | 0.67656 |
Target: 5'- -gGAGgcgcgcCAUGacGCCAAGGCACaaguggGGCACg -3' miRNA: 3'- ugCUCaa----GUAC--CGGUUCCGUG------UCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 17194 | 0.73 | 0.286754 |
Target: 5'- gACGAGUcCcgGGCCAccgAGGcCugGGCGCu -3' miRNA: 3'- -UGCUCAaGuaCCGGU---UCC-GugUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 17454 | 0.67 | 0.631167 |
Target: 5'- gGCGAGUcccggcgcUCGuacUGGCgaAAGGCACucGCGCg -3' miRNA: 3'- -UGCUCA--------AGU---ACCGg-UUCCGUGu-CGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 19680 | 0.72 | 0.351295 |
Target: 5'- gACGAGaagCAUGccGCCAGGGC-CAGUGCg -3' miRNA: 3'- -UGCUCaa-GUAC--CGGUUCCGuGUCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 20112 | 0.67 | 0.619793 |
Target: 5'- gGCGGGgcuggagUCc-GGCCuaGAGGCGCuGCGCa -3' miRNA: 3'- -UGCUCa------AGuaCCGG--UUCCGUGuCGUG- -5' |
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11501 | 3' | -54.2 | NC_003085.1 | + | 22188 | 0.71 | 0.406079 |
Target: 5'- gGCGaAGgugCA-GGCCGAGGUGCAGgGCg -3' miRNA: 3'- -UGC-UCaa-GUaCCGGUUCCGUGUCgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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