miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 5' -57 NC_003085.1 + 1757 1.09 0.00054
Target:  5'- cAGGCGCAGCAGUCGACGACUCGCAUCu -3'
miRNA:   3'- -UCCGCGUCGUCAGCUGCUGAGCGUAG- -5'
11508 5' -57 NC_003085.1 + 29105 0.75 0.175773
Target:  5'- cGGCGuCAGCAG-CGGCGACgcggCGCGg- -3'
miRNA:   3'- uCCGC-GUCGUCaGCUGCUGa---GCGUag -5'
11508 5' -57 NC_003085.1 + 18356 0.74 0.206609
Target:  5'- gGGGCGguGCAGgcCGugGAgUCGCuGUCc -3'
miRNA:   3'- -UCCGCguCGUCa-GCugCUgAGCG-UAG- -5'
11508 5' -57 NC_003085.1 + 13303 0.72 0.248383
Target:  5'- cGGCG-AGCGGUCGGCGACcauCAUCa -3'
miRNA:   3'- uCCGCgUCGUCAGCUGCUGagcGUAG- -5'
11508 5' -57 NC_003085.1 + 3686 0.71 0.282329
Target:  5'- cGGCGCGGCgAGUCcuGACG-C-CGCGUCc -3'
miRNA:   3'- uCCGCGUCG-UCAG--CUGCuGaGCGUAG- -5'
11508 5' -57 NC_003085.1 + 49160 0.71 0.282329
Target:  5'- cGGGgGCAGCGGaCGGgGACUCgGCgGUCa -3'
miRNA:   3'- -UCCgCGUCGUCaGCUgCUGAG-CG-UAG- -5'
11508 5' -57 NC_003085.1 + 12025 0.71 0.312054
Target:  5'- cGGGCGCGG-GGUUGGCG-CUCGCu-- -3'
miRNA:   3'- -UCCGCGUCgUCAGCUGCuGAGCGuag -5'
11508 5' -57 NC_003085.1 + 23443 0.71 0.323005
Target:  5'- cAGGCGCAGCAGg-GACGcaugacggaggcccaGCgcaGCGUCg -3'
miRNA:   3'- -UCCGCGUCGUCagCUGC---------------UGag-CGUAG- -5'
11508 5' -57 NC_003085.1 + 2791 0.7 0.360983
Target:  5'- cGGCGCuccaGGCGG-CGGCGAagcgcCUCgGCAUCa -3'
miRNA:   3'- uCCGCG----UCGUCaGCUGCU-----GAG-CGUAG- -5'
11508 5' -57 NC_003085.1 + 47369 0.7 0.36964
Target:  5'- uGGCGCcgAGguG-CGGCGGCugcgcucgUCGCGUCa -3'
miRNA:   3'- uCCGCG--UCguCaGCUGCUG--------AGCGUAG- -5'
11508 5' -57 NC_003085.1 + 38435 0.69 0.377552
Target:  5'- cGGGCcugucuCGGCGGUCGACGAguucuuccagcaaCUCGCGa- -3'
miRNA:   3'- -UCCGc-----GUCGUCAGCUGCU-------------GAGCGUag -5'
11508 5' -57 NC_003085.1 + 3911 0.69 0.378438
Target:  5'- -uGCGCgAGgAGUUGACacgccaGGCUCGCGUCg -3'
miRNA:   3'- ucCGCG-UCgUCAGCUG------CUGAGCGUAG- -5'
11508 5' -57 NC_003085.1 + 20628 0.69 0.378438
Target:  5'- cGGCGCuucGCGGacgCGGacgaugacgUGGCUCGCGUCg -3'
miRNA:   3'- uCCGCGu--CGUCa--GCU---------GCUGAGCGUAG- -5'
11508 5' -57 NC_003085.1 + 48842 0.68 0.443815
Target:  5'- uGGCGCAGCacaacccgccguAGgccgCGACGgGCUUGCAgUCg -3'
miRNA:   3'- uCCGCGUCG------------UCa---GCUGC-UGAGCGU-AG- -5'
11508 5' -57 NC_003085.1 + 34190 0.68 0.453664
Target:  5'- cGGGCGCGGCGGgUGAgcuCGGC-CGCGg- -3'
miRNA:   3'- -UCCGCGUCGUCaGCU---GCUGaGCGUag -5'
11508 5' -57 NC_003085.1 + 11746 0.68 0.463632
Target:  5'- gGGGUuccgucGUAGCAGUCGACG---CGCAUUg -3'
miRNA:   3'- -UCCG------CGUCGUCAGCUGCugaGCGUAG- -5'
11508 5' -57 NC_003085.1 + 28875 0.68 0.473713
Target:  5'- cGGCGCugccgagcAGCAGUCGcagGCGuCUCagcagaGCAUCa -3'
miRNA:   3'- uCCGCG--------UCGUCAGC---UGCuGAG------CGUAG- -5'
11508 5' -57 NC_003085.1 + 34787 0.67 0.483903
Target:  5'- cAGGCGCAGUA--CGACGAg-CGguUCa -3'
miRNA:   3'- -UCCGCGUCGUcaGCUGCUgaGCguAG- -5'
11508 5' -57 NC_003085.1 + 2360 0.67 0.494196
Target:  5'- gAGGCGCAGUgcgAGgccgCGGCGcgcgagcuCUCGCAg- -3'
miRNA:   3'- -UCCGCGUCG---UCa---GCUGCu-------GAGCGUag -5'
11508 5' -57 NC_003085.1 + 42750 0.67 0.494196
Target:  5'- cGGGCGCGGUGGaCGGCauccaucGC-CGCGUCg -3'
miRNA:   3'- -UCCGCGUCGUCaGCUGc------UGaGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.