Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11508 | 5' | -57 | NC_003085.1 | + | 1757 | 1.09 | 0.00054 |
Target: 5'- cAGGCGCAGCAGUCGACGACUCGCAUCu -3' miRNA: 3'- -UCCGCGUCGUCAGCUGCUGAGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 2360 | 0.67 | 0.494196 |
Target: 5'- gAGGCGCAGUgcgAGgccgCGGCGcgcgagcuCUCGCAg- -3' miRNA: 3'- -UCCGCGUCG---UCa---GCUGCu-------GAGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 2791 | 0.7 | 0.360983 |
Target: 5'- cGGCGCuccaGGCGG-CGGCGAagcgcCUCgGCAUCa -3' miRNA: 3'- uCCGCG----UCGUCaGCUGCU-----GAG-CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 3686 | 0.71 | 0.282329 |
Target: 5'- cGGCGCGGCgAGUCcuGACG-C-CGCGUCc -3' miRNA: 3'- uCCGCGUCG-UCAG--CUGCuGaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 3911 | 0.69 | 0.378438 |
Target: 5'- -uGCGCgAGgAGUUGACacgccaGGCUCGCGUCg -3' miRNA: 3'- ucCGCG-UCgUCAGCUG------CUGAGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 5049 | 0.66 | 0.557825 |
Target: 5'- cAGGCGCAGgGacuccUGACGGCugggcaucguggUCGCGUCa -3' miRNA: 3'- -UCCGCGUCgUca---GCUGCUG------------AGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 6289 | 0.67 | 0.504589 |
Target: 5'- -cGCGCGGCGGUgGAgCGACUggaGCAg- -3' miRNA: 3'- ucCGCGUCGUCAgCU-GCUGAg--CGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 7138 | 0.67 | 0.504589 |
Target: 5'- uGGUGaCAccGCAGcCGACGAaucCGCAUCg -3' miRNA: 3'- uCCGC-GU--CGUCaGCUGCUga-GCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 8183 | 0.66 | 0.56868 |
Target: 5'- -uGCGCAGCGcuUCGGCGuCUCGgUGUCg -3' miRNA: 3'- ucCGCGUCGUc-AGCUGCuGAGC-GUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 11746 | 0.68 | 0.463632 |
Target: 5'- gGGGUuccgucGUAGCAGUCGACG---CGCAUUg -3' miRNA: 3'- -UCCG------CGUCGUCAGCUGCugaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 12025 | 0.71 | 0.312054 |
Target: 5'- cGGGCGCGG-GGUUGGCG-CUCGCu-- -3' miRNA: 3'- -UCCGCGUCgUCAGCUGCuGAGCGuag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 13303 | 0.72 | 0.248383 |
Target: 5'- cGGCG-AGCGGUCGGCGACcauCAUCa -3' miRNA: 3'- uCCGCgUCGUCAGCUGCUGagcGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 14908 | 0.66 | 0.54703 |
Target: 5'- cGGCGCAcGCGGgccggcuggUGGCG-CUCGCGg- -3' miRNA: 3'- uCCGCGU-CGUCa--------GCUGCuGAGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 15534 | 0.66 | 0.54703 |
Target: 5'- uGGCGCAgGCGGUUGAgccCGAgUacuccaguugCGCGUCa -3' miRNA: 3'- uCCGCGU-CGUCAGCU---GCUgA----------GCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 16387 | 0.67 | 0.524587 |
Target: 5'- cGGGCaaaguugGCAGguGUCGAgGGCgcguugaaGCGUCu -3' miRNA: 3'- -UCCG-------CGUCguCAGCUgCUGag------CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 18356 | 0.74 | 0.206609 |
Target: 5'- gGGGCGguGCAGgcCGugGAgUCGCuGUCc -3' miRNA: 3'- -UCCGCguCGUCa-GCugCUgAGCG-UAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 20628 | 0.69 | 0.378438 |
Target: 5'- cGGCGCuucGCGGacgCGGacgaugacgUGGCUCGCGUCg -3' miRNA: 3'- uCCGCGu--CGUCa--GCU---------GCUGAGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 23443 | 0.71 | 0.323005 |
Target: 5'- cAGGCGCAGCAGg-GACGcaugacggaggcccaGCgcaGCGUCg -3' miRNA: 3'- -UCCGCGUCGUCagCUGC---------------UGag-CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 24200 | 0.66 | 0.579587 |
Target: 5'- cGGGCGC-GCcGaCGACGACgccCGCcgCg -3' miRNA: 3'- -UCCGCGuCGuCaGCUGCUGa--GCGuaG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 24699 | 0.67 | 0.536302 |
Target: 5'- uGGUGCuggacGGCGGcaUCGGCGGCUuCGCGg- -3' miRNA: 3'- uCCGCG-----UCGUC--AGCUGCUGA-GCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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