miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 12656 0.67 0.657423
Target:  5'- --uGuCGCGCUCgccGGaGUGGAGACGCu -3'
miRNA:   3'- guuC-GCGCGGGacuUC-CACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12675 0.73 0.301618
Target:  5'- gAAGUGUGCgCCUGccuccGGGUGGAuGACGCc -3'
miRNA:   3'- gUUCGCGCG-GGACu----UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12803 0.68 0.568374
Target:  5'- gCAGGUGCuccacGCCCUGAcGGUccGGgcGGAUGCg -3'
miRNA:   3'- -GUUCGCG-----CGGGACUuCCA--CU--UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 13572 0.67 0.646268
Target:  5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3'
miRNA:   3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 13793 0.67 0.645151
Target:  5'- gCGAGCGUgacGCCagucugcgUGGAGGUGGcgccaugacgugcAGACGCc -3'
miRNA:   3'- -GUUCGCG---CGGg-------ACUUCCACU-------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 14861 0.7 0.462129
Target:  5'- aUAGGCGCGCgCgcAAGGUGAcGGACGa -3'
miRNA:   3'- -GUUCGCGCGgGacUUCCACU-UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 15075 0.69 0.514137
Target:  5'- gGAGUugGCCCUGGAGGaggGAcGGCGCc -3'
miRNA:   3'- gUUCGcgCGGGACUUCCa--CUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 15123 0.66 0.723454
Target:  5'- gGAGCGcCGCgCCgcguGGUGcgacgagcacGAGACGCa -3'
miRNA:   3'- gUUCGC-GCG-GGacuuCCAC----------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 15778 0.67 0.668555
Target:  5'- uGAGCGCGUcaacgcguuUCUGGAGGccaagUGAAcGCGCu -3'
miRNA:   3'- gUUCGCGCG---------GGACUUCC-----ACUUcUGCG- -5'
11509 3' -54.7 NC_003085.1 + 15958 0.68 0.601617
Target:  5'- -uGGCGCuCCCUuggccgcugGGAGGUGggG-CGUg -3'
miRNA:   3'- guUCGCGcGGGA---------CUUCCACuuCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 16111 0.66 0.690701
Target:  5'- gAAGgGCGacauCCUGGAGGUc--GACGCc -3'
miRNA:   3'- gUUCgCGCg---GGACUUCCAcuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 17239 0.66 0.679651
Target:  5'- -cGGCGCcccguGCUCUGGGcGGUGuugcgcAGGGCGCg -3'
miRNA:   3'- guUCGCG-----CGGGACUU-CCAC------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 17646 0.67 0.623928
Target:  5'- gCAGGCGUgaGCCacgGGAGG--GAGGCGCu -3'
miRNA:   3'- -GUUCGCG--CGGga-CUUCCacUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 18387 0.72 0.367272
Target:  5'- --uGCGCGUgCCUGAGGGUGcgcaccccGAGGCGa -3'
miRNA:   3'- guuCGCGCG-GGACUUCCAC--------UUCUGCg -5'
11509 3' -54.7 NC_003085.1 + 18671 0.69 0.503532
Target:  5'- gCGAGCGCacuCCugCUGAGGGUGAcgccggucAGugGCc -3'
miRNA:   3'- -GUUCGCGc--GG--GACUUCCACU--------UCugCG- -5'
11509 3' -54.7 NC_003085.1 + 19689 0.66 0.723454
Target:  5'- -uGGCG-GCCCUGGAGGc----GCGCg -3'
miRNA:   3'- guUCGCgCGGGACUUCCacuucUGCG- -5'
11509 3' -54.7 NC_003085.1 + 20088 0.67 0.623928
Target:  5'- --cGCGCGCUgUGAcgugccgcAGGUGgcGGgGCu -3'
miRNA:   3'- guuCGCGCGGgACU--------UCCACuuCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 20948 0.7 0.442109
Target:  5'- --cGCGCGCgUCUGcacGAGGUGcGGugGCu -3'
miRNA:   3'- guuCGCGCG-GGAC---UUCCACuUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 21141 0.7 0.482617
Target:  5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3'
miRNA:   3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 21364 0.73 0.309306
Target:  5'- -uGGCGCGCgCUGcccaaguuGGUGAAGGCGg -3'
miRNA:   3'- guUCGCGCGgGACuu------CCACUUCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.