miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 620 0.65 0.730987
Target:  5'- uGGGCGCGCUC-GAGGcUGGcgcggaccucgucgAGGCGCu -3'
miRNA:   3'- gUUCGCGCGGGaCUUCcACU--------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 705 0.67 0.668555
Target:  5'- uCGGGCGCGgCCUGAgcAGGUccacccGCGCc -3'
miRNA:   3'- -GUUCGCGCgGGACU--UCCAcuuc--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 985 0.66 0.701692
Target:  5'- gAGGCGCuuGCCgaGAgcacgccaAGGcUGAGGugGCc -3'
miRNA:   3'- gUUCGCG--CGGgaCU--------UCC-ACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 1435 1.11 0.000732
Target:  5'- cCAAGCGCGCCCUGAAGGUGAAGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUCCACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 3104 0.67 0.657423
Target:  5'- aAGGCGCGgCUUGAGGcGaUGcucgaccuugaGAGGCGCg -3'
miRNA:   3'- gUUCGCGCgGGACUUC-C-AC-----------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 3704 0.66 0.723454
Target:  5'- --cGcCGCGUCCggugcUGguGGUGAcGACGCa -3'
miRNA:   3'- guuC-GCGCGGG-----ACuuCCACUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 5308 0.71 0.394303
Target:  5'- aAGGCGCGCgccguCCUGAAGGcgaccgaGAAG-CGCg -3'
miRNA:   3'- gUUCGCGCG-----GGACUUCCa------CUUCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 5319 0.67 0.657423
Target:  5'- gCGAGCGCGUggccaCgCUGGAGGcGAAGucaGCa -3'
miRNA:   3'- -GUUCGCGCG-----G-GACUUCCaCUUCug-CG- -5'
11509 3' -54.7 NC_003085.1 + 5830 0.66 0.723454
Target:  5'- gAGGCGUcaGCCCUGcAGGUccggGAcugGGACGg -3'
miRNA:   3'- gUUCGCG--CGGGACuUCCA----CU---UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 6276 0.72 0.341543
Target:  5'- uGGGaUGCGCUCUGuAGG-GAAGugGCg -3'
miRNA:   3'- gUUC-GCGCGGGACuUCCaCUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 7208 0.66 0.723454
Target:  5'- ---cCGCGCCCUGccGcUGGAGuaGCGCg -3'
miRNA:   3'- guucGCGCGGGACuuCcACUUC--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 7467 0.71 0.403595
Target:  5'- uGGGCgucGCGCCucacgCUGGAGGUGAcGGGCGUc -3'
miRNA:   3'- gUUCG---CGCGG-----GACUUCCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7605 0.67 0.646268
Target:  5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3'
miRNA:   3'- guucGCGCGGG--ACuuCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 7914 0.73 0.320319
Target:  5'- gCGAGCGCGUCCUGucGGcgugcaccaacucguUGcGGAUGCg -3'
miRNA:   3'- -GUUCGCGCGGGACuuCC---------------ACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 9046 0.76 0.220693
Target:  5'- -cAGCGCGCCUccGAAGGUGGugaggaguuGGAUGCc -3'
miRNA:   3'- guUCGCGCGGGa-CUUCCACU---------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 9394 0.67 0.633982
Target:  5'- aCGAGCgaaacucGUGCCaucGGGGuUGAAGACGCa -3'
miRNA:   3'- -GUUCG-------CGCGGgacUUCC-ACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 11301 0.66 0.723454
Target:  5'- gAAGCGCGCgCUGGcgcuuguggacgAGGacugGAAGuccCGCg -3'
miRNA:   3'- gUUCGCGCGgGACU------------UCCa---CUUCu--GCG- -5'
11509 3' -54.7 NC_003085.1 + 11664 0.66 0.679651
Target:  5'- cCGGGUG-GCCgaGGAGGUGggGcUGUg -3'
miRNA:   3'- -GUUCGCgCGGgaCUUCCACuuCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 11888 0.66 0.723454
Target:  5'- uGAGCGCGCCgaGuucauGGcc-AGGCGCu -3'
miRNA:   3'- gUUCGCGCGGgaCuu---CCacuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12002 0.66 0.679651
Target:  5'- -cAGCGUGUUCgUGAAugcGGUGGcGGGCGCg -3'
miRNA:   3'- guUCGCGCGGG-ACUU---CCACU-UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.