miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 1435 1.11 0.000732
Target:  5'- cCAAGCGCGCCCUGAAGGUGAAGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUCCACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 39720 0.77 0.172807
Target:  5'- cCAAGCGCGCCCUGGAcuccauGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUccacuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 26709 0.77 0.177632
Target:  5'- uCGAGCGCGCgCagGgcGGUGAcGGCGCg -3'
miRNA:   3'- -GUUCGCGCGgGa-CuuCCACUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 33203 0.76 0.214858
Target:  5'- --cGgGCGUCCUGGAGGcGgcGGCGCa -3'
miRNA:   3'- guuCgCGCGGGACUUCCaCuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 9046 0.76 0.220693
Target:  5'- -cAGCGCGCCUccGAAGGUGGugaggaguuGGAUGCc -3'
miRNA:   3'- guUCGCGCGGGa-CUUCCACU---------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 31829 0.75 0.226662
Target:  5'- gGAGCGCGCagcGAAGGuUGAAGcACGCg -3'
miRNA:   3'- gUUCGCGCGggaCUUCC-ACUUC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 29127 0.74 0.261287
Target:  5'- gAGGCGCcgugGCCCagaguucauccagggUGAAGGUGGcGGGCGCg -3'
miRNA:   3'- gUUCGCG----CGGG---------------ACUUCCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25924 0.74 0.286686
Target:  5'- --uGCGUGCCCUcguggaGAAGGcGAAGACuGCg -3'
miRNA:   3'- guuCGCGCGGGA------CUUCCaCUUCUG-CG- -5'
11509 3' -54.7 NC_003085.1 + 12675 0.73 0.301618
Target:  5'- gAAGUGUGCgCCUGccuccGGGUGGAuGACGCc -3'
miRNA:   3'- gUUCGCGCG-GGACu----UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 21364 0.73 0.309306
Target:  5'- -uGGCGCGCgCUGcccaaguuGGUGAAGGCGg -3'
miRNA:   3'- guUCGCGCGgGACuu------CCACUUCUGCg -5'
11509 3' -54.7 NC_003085.1 + 7914 0.73 0.320319
Target:  5'- gCGAGCGCGUCCUGucGGcgugcaccaacucguUGcGGAUGCg -3'
miRNA:   3'- -GUUCGCGCGGGACuuCC---------------ACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 6276 0.72 0.341543
Target:  5'- uGGGaUGCGCUCUGuAGG-GAAGugGCg -3'
miRNA:   3'- gUUC-GCGCGGGACuUCCaCUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 18387 0.72 0.367272
Target:  5'- --uGCGCGUgCCUGAGGGUGcgcaccccGAGGCGa -3'
miRNA:   3'- guuCGCGCG-GGACUUCCAC--------UUCUGCg -5'
11509 3' -54.7 NC_003085.1 + 25919 0.72 0.373464
Target:  5'- cCGAGCaGCGCCCUGGAGGaGcAucugcauucuucacGGACGUc -3'
miRNA:   3'- -GUUCG-CGCGGGACUUCCaC-U--------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 5308 0.71 0.394303
Target:  5'- aAGGCGCGCgccguCCUGAAGGcgaccgaGAAG-CGCg -3'
miRNA:   3'- gUUCGCGCG-----GGACUUCCa------CUUCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 7467 0.71 0.403595
Target:  5'- uGGGCgucGCGCCucacgCUGGAGGUGAcGGGCGUc -3'
miRNA:   3'- gUUCG---CGCGG-----GACUUCCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 22603 0.71 0.432285
Target:  5'- gCAGGUGCGCCUccugaaucGAGGGUGGcGGGgGCa -3'
miRNA:   3'- -GUUCGCGCGGGa-------CUUCCACU-UCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 25276 0.71 0.436199
Target:  5'- -cGGCGCGCCCgucuaccucaccgcGAcggccggccAGGUGGAcGACGCc -3'
miRNA:   3'- guUCGCGCGGGa-------------CU---------UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 20948 0.7 0.442109
Target:  5'- --cGCGCGCgUCUGcacGAGGUGcGGugGCu -3'
miRNA:   3'- guuCGCGCG-GGAC---UUCCACuUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 38344 0.7 0.452059
Target:  5'- aCGAcGCGCGCCCcaacGAAGGcGGAGaagucacucgGCGCa -3'
miRNA:   3'- -GUU-CGCGCGGGa---CUUCCaCUUC----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.