miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 30001 0.68 0.568374
Target:  5'- gGAGCG-GCCCUGGGcGGccuUGgcGACGUc -3'
miRNA:   3'- gUUCGCgCGGGACUU-CC---ACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 41456 0.7 0.472317
Target:  5'- -uGGCGCGCaaggCUGGggcgcGGGUGAAGuacCGCg -3'
miRNA:   3'- guUCGCGCGg---GACU-----UCCACUUCu--GCG- -5'
11509 3' -54.7 NC_003085.1 + 25773 0.7 0.482617
Target:  5'- gCGGGCaaGUCCgacgUGcAGGUGggGACGCc -3'
miRNA:   3'- -GUUCGcgCGGG----ACuUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 21141 0.7 0.482617
Target:  5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3'
miRNA:   3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 30328 0.7 0.482617
Target:  5'- -cAGCGgGCCCUGgcGGacgcUGucgcGGGGCGCa -3'
miRNA:   3'- guUCGCgCGGGACuuCC----AC----UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 18671 0.69 0.503532
Target:  5'- gCGAGCGCacuCCugCUGAGGGUGAcgccggucAGugGCc -3'
miRNA:   3'- -GUUCGCGc--GG--GACUUCCACU--------UCugCG- -5'
11509 3' -54.7 NC_003085.1 + 15075 0.69 0.514137
Target:  5'- gGAGUugGCCCUGGAGGaggGAcGGCGCc -3'
miRNA:   3'- gUUCGcgCGGGACUUCCa--CUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 38547 0.68 0.557389
Target:  5'- -cGGCaaGCCCuUGcuGGUGAGcGACGCg -3'
miRNA:   3'- guUCGcgCGGG-ACuuCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12803 0.68 0.568374
Target:  5'- gCAGGUGCuccacGCCCUGAcGGUccGGgcGGAUGCg -3'
miRNA:   3'- -GUUCGCG-----CGGGACUuCCA--CU--UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 14861 0.7 0.462129
Target:  5'- aUAGGCGCGCgCgcAAGGUGAcGGACGa -3'
miRNA:   3'- -GUUCGCGCGgGacUUCCACU-UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 20948 0.7 0.442109
Target:  5'- --cGCGCGCgUCUGcacGAGGUGcGGugGCu -3'
miRNA:   3'- guuCGCGCG-GGAC---UUCCACuUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 25276 0.71 0.436199
Target:  5'- -cGGCGCGCCCgucuaccucaccgcGAcggccggccAGGUGGAcGACGCc -3'
miRNA:   3'- guUCGCGCGGGa-------------CU---------UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 31829 0.75 0.226662
Target:  5'- gGAGCGCGCagcGAAGGuUGAAGcACGCg -3'
miRNA:   3'- gUUCGCGCGggaCUUCC-ACUUC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 25924 0.74 0.286686
Target:  5'- --uGCGUGCCCUcguggaGAAGGcGAAGACuGCg -3'
miRNA:   3'- guuCGCGCGGGA------CUUCCaCUUCUG-CG- -5'
11509 3' -54.7 NC_003085.1 + 12675 0.73 0.301618
Target:  5'- gAAGUGUGCgCCUGccuccGGGUGGAuGACGCc -3'
miRNA:   3'- gUUCGCGCG-GGACu----UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7914 0.73 0.320319
Target:  5'- gCGAGCGCGUCCUGucGGcgugcaccaacucguUGcGGAUGCg -3'
miRNA:   3'- -GUUCGCGCGGGACuuCC---------------ACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 6276 0.72 0.341543
Target:  5'- uGGGaUGCGCUCUGuAGG-GAAGugGCg -3'
miRNA:   3'- gUUC-GCGCGGGACuUCCaCUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 18387 0.72 0.367272
Target:  5'- --uGCGCGUgCCUGAGGGUGcgcaccccGAGGCGa -3'
miRNA:   3'- guuCGCGCG-GGACUUCCAC--------UUCUGCg -5'
11509 3' -54.7 NC_003085.1 + 5308 0.71 0.394303
Target:  5'- aAGGCGCGCgccguCCUGAAGGcgaccgaGAAG-CGCg -3'
miRNA:   3'- gUUCGCGCG-----GGACUUCCa------CUUCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 7467 0.71 0.403595
Target:  5'- uGGGCgucGCGCCucacgCUGGAGGUGAcGGGCGUc -3'
miRNA:   3'- gUUCG---CGCGG-----GACUUCCACU-UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.