miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 7208 0.66 0.723454
Target:  5'- ---cCGCGCCCUGccGcUGGAGuaGCGCg -3'
miRNA:   3'- guucGCGCGGGACuuCcACUUC--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 34355 0.67 0.645151
Target:  5'- -cGGCGCuccauccGCUCgucGAGGGUG-AGGCGCc -3'
miRNA:   3'- guUCGCG-------CGGGa--CUUCCACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 22303 0.68 0.601617
Target:  5'- -cAGCGuCGCCCgucugguccccGAAGGUGAgcaccugcguGGGCGUc -3'
miRNA:   3'- guUCGC-GCGGGa----------CUUCCACU----------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 1435 1.11 0.000732
Target:  5'- cCAAGCGCGCCCUGAAGGUGAAGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUCCACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 26470 0.66 0.700596
Target:  5'- -cGGCGCGCgcaccucuggcugCUUGggGGUGGcAGACu- -3'
miRNA:   3'- guUCGCGCG-------------GGACuuCCACU-UCUGcg -5'
11509 3' -54.7 NC_003085.1 + 26201 0.66 0.690701
Target:  5'- aCGAGCuGCGCCUUGugcgcgGgcGGCGCg -3'
miRNA:   3'- -GUUCG-CGCGGGACuucca-CuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29217 0.66 0.679651
Target:  5'- gCGAcUGCGCCaccugggcGAAGGUGgcGACGUa -3'
miRNA:   3'- -GUUcGCGCGGga------CUUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 17239 0.66 0.679651
Target:  5'- -cGGCGCcccguGCUCUGGGcGGUGuugcgcAGGGCGCg -3'
miRNA:   3'- guUCGCG-----CGGGACUU-CCAC------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 48855 0.67 0.668555
Target:  5'- uCGAGCGCGCCC---AGGac--GGCGCc -3'
miRNA:   3'- -GUUCGCGCGGGacuUCCacuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 27775 0.67 0.646268
Target:  5'- gAAGCGggccaccuCGUCCUGGAGGcgcUGAagccGGAUGCu -3'
miRNA:   3'- gUUCGC--------GCGGGACUUCC---ACU----UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 40560 0.67 0.668555
Target:  5'- gAGGCGCaagGCCUUGGuggcGGUGcgcaugccAGACGCg -3'
miRNA:   3'- gUUCGCG---CGGGACUu---CCACu-------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 44079 0.66 0.678543
Target:  5'- -cGGCGUagGCCUcGAcGGUGAcgggaccGGACGCg -3'
miRNA:   3'- guUCGCG--CGGGaCUuCCACU-------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 45913 0.66 0.723454
Target:  5'- -cGGC-CGCCUUGAGcGUGGuccaagGGGCGCa -3'
miRNA:   3'- guUCGcGCGGGACUUcCACU------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 5319 0.67 0.657423
Target:  5'- gCGAGCGCGUggccaCgCUGGAGGcGAAGucaGCa -3'
miRNA:   3'- -GUUCGCGCG-----G-GACUUCCaCUUCug-CG- -5'
11509 3' -54.7 NC_003085.1 + 3704 0.66 0.723454
Target:  5'- --cGcCGCGUCCggugcUGguGGUGAcGACGCa -3'
miRNA:   3'- guuC-GCGCGGG-----ACuuCCACUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12002 0.66 0.679651
Target:  5'- -cAGCGUGUUCgUGAAugcGGUGGcGGGCGCg -3'
miRNA:   3'- guUCGCGCGGG-ACUU---CCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12656 0.67 0.657423
Target:  5'- --uGuCGCGCUCgccGGaGUGGAGACGCu -3'
miRNA:   3'- guuC-GCGCGGGacuUC-CACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 9394 0.67 0.633982
Target:  5'- aCGAGCgaaacucGUGCCaucGGGGuUGAAGACGCa -3'
miRNA:   3'- -GUUCG-------CGCGGgacUUCC-ACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 985 0.66 0.701692
Target:  5'- gAGGCGCuuGCCgaGAgcacgccaAGGcUGAGGugGCc -3'
miRNA:   3'- gUUCGCG--CGGgaCU--------UCC-ACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 16111 0.66 0.690701
Target:  5'- gAAGgGCGacauCCUGGAGGUc--GACGCc -3'
miRNA:   3'- gUUCgCGCg---GGACUUCCAcuuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.