miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 44079 0.66 0.678543
Target:  5'- -cGGCGUagGCCUcGAcGGUGAcgggaccGGACGCg -3'
miRNA:   3'- guUCGCG--CGGGaCUuCCACU-------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 985 0.66 0.701692
Target:  5'- gAGGCGCuuGCCgaGAgcacgccaAGGcUGAGGugGCc -3'
miRNA:   3'- gUUCGCG--CGGgaCU--------UCC-ACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 39720 0.77 0.172807
Target:  5'- cCAAGCGCGCCCUGGAcuccauGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUccacuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 38344 0.7 0.452059
Target:  5'- aCGAcGCGCGCCCcaacGAAGGcGGAGaagucacucgGCGCa -3'
miRNA:   3'- -GUU-CGCGCGGGa---CUUCCaCUUC----------UGCG- -5'
11509 3' -54.7 NC_003085.1 + 34355 0.67 0.645151
Target:  5'- -cGGCGCuccauccGCUCgucGAGGGUG-AGGCGCc -3'
miRNA:   3'- guUCGCG-------CGGGa--CUUCCACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 3704 0.66 0.723454
Target:  5'- --cGcCGCGUCCggugcUGguGGUGAcGACGCa -3'
miRNA:   3'- guuC-GCGCGGG-----ACuuCCACUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 30507 0.7 0.466191
Target:  5'- gAAGCGCgccaccgucggcgggGCCCUGuAGGcGAuGGCGCu -3'
miRNA:   3'- gUUCGCG---------------CGGGACuUCCaCUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 45913 0.66 0.723454
Target:  5'- -cGGC-CGCCUUGAGcGUGGuccaagGGGCGCa -3'
miRNA:   3'- guUCGcGCGGGACUUcCACU------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7208 0.66 0.723454
Target:  5'- ---cCGCGCCCUGccGcUGGAGuaGCGCg -3'
miRNA:   3'- guucGCGCGGGACuuCcACUUC--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 9394 0.67 0.633982
Target:  5'- aCGAGCgaaacucGUGCCaucGGGGuUGAAGACGCa -3'
miRNA:   3'- -GUUCG-------CGCGGgacUUCC-ACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29127 0.74 0.261287
Target:  5'- gAGGCGCcgugGCCCagaguucauccagggUGAAGGUGGcGGGCGCg -3'
miRNA:   3'- gUUCGCG----CGGG---------------ACUUCCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29217 0.66 0.679651
Target:  5'- gCGAcUGCGCCaccugggcGAAGGUGgcGACGUa -3'
miRNA:   3'- -GUUcGCGCGGga------CUUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 26470 0.66 0.700596
Target:  5'- -cGGCGCGCgcaccucuggcugCUUGggGGUGGcAGACu- -3'
miRNA:   3'- guUCGCGCG-------------GGACuuCCACU-UCUGcg -5'
11509 3' -54.7 NC_003085.1 + 28121 0.69 0.53561
Target:  5'- -uGGCGCGCuCCaGcAGGGUGAu-GCGCg -3'
miRNA:   3'- guUCGCGCG-GGaC-UUCCACUucUGCG- -5'
11509 3' -54.7 NC_003085.1 + 22603 0.71 0.432285
Target:  5'- gCAGGUGCGCCUccugaaucGAGGGUGGcGGGgGCa -3'
miRNA:   3'- -GUUCGCGCGGGa-------CUUCCACU-UCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 1435 1.11 0.000732
Target:  5'- cCAAGCGCGCCCUGAAGGUGAAGACGCc -3'
miRNA:   3'- -GUUCGCGCGGGACUUCCACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 21141 0.7 0.482617
Target:  5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3'
miRNA:   3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 31307 0.67 0.646268
Target:  5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3'
miRNA:   3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7605 0.67 0.646268
Target:  5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3'
miRNA:   3'- guucGCGCGGG--ACuuCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 13572 0.67 0.646268
Target:  5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3'
miRNA:   3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.