miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 45967 0.66 0.679651
Target:  5'- -cAGCGuCGCCUUGggGcG-GcAGAUGCg -3'
miRNA:   3'- guUCGC-GCGGGACuuC-CaCuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 38133 0.66 0.679651
Target:  5'- gAGGCucgcCGCCCUGcuggcguuGGUGguGGCGCu -3'
miRNA:   3'- gUUCGc---GCGGGACuu------CCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29217 0.66 0.679651
Target:  5'- gCGAcUGCGCCaccugggcGAAGGUGgcGACGUa -3'
miRNA:   3'- -GUUcGCGCGGga------CUUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 17239 0.66 0.679651
Target:  5'- -cGGCGCcccguGCUCUGGGcGGUGuugcgcAGGGCGCg -3'
miRNA:   3'- guUCGCG-----CGGGACUU-CCAC------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12002 0.66 0.679651
Target:  5'- -cAGCGUGUUCgUGAAugcGGUGGcGGGCGCg -3'
miRNA:   3'- guUCGCGCGGG-ACUU---CCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 47976 0.66 0.679651
Target:  5'- aCGGGcCGCGUCgaGcaagucgcgGAGG-GAGGACGCg -3'
miRNA:   3'- -GUUC-GCGCGGgaC---------UUCCaCUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 44079 0.66 0.678543
Target:  5'- -cGGCGUagGCCUcGAcGGUGAcgggaccGGACGCg -3'
miRNA:   3'- guUCGCG--CGGGaCUuCCACU-------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 15778 0.67 0.668555
Target:  5'- uGAGCGCGUcaacgcguuUCUGGAGGccaagUGAAcGCGCu -3'
miRNA:   3'- gUUCGCGCG---------GGACUUCC-----ACUUcUGCG- -5'
11509 3' -54.7 NC_003085.1 + 40560 0.67 0.668555
Target:  5'- gAGGCGCaagGCCUUGGuggcGGUGcgcaugccAGACGCg -3'
miRNA:   3'- gUUCGCG---CGGGACUu---CCACu-------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 48855 0.67 0.668555
Target:  5'- uCGAGCGCGCCC---AGGac--GGCGCc -3'
miRNA:   3'- -GUUCGCGCGGGacuUCCacuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 32804 0.67 0.668555
Target:  5'- aCAGGCaGCGCCCguccUGAAGGcauucaGCGCa -3'
miRNA:   3'- -GUUCG-CGCGGG----ACUUCCacuuc-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 705 0.67 0.668555
Target:  5'- uCGGGCGCGgCCUGAgcAGGUccacccGCGCc -3'
miRNA:   3'- -GUUCGCGCgGGACU--UCCAcuuc--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 5319 0.67 0.657423
Target:  5'- gCGAGCGCGUggccaCgCUGGAGGcGAAGucaGCa -3'
miRNA:   3'- -GUUCGCGCG-----G-GACUUCCaCUUCug-CG- -5'
11509 3' -54.7 NC_003085.1 + 12656 0.67 0.657423
Target:  5'- --uGuCGCGCUCgccGGaGUGGAGACGCu -3'
miRNA:   3'- guuC-GCGCGGGacuUC-CACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 3104 0.67 0.657423
Target:  5'- aAGGCGCGgCUUGAGGcGaUGcucgaccuugaGAGGCGCg -3'
miRNA:   3'- gUUCGCGCgGGACUUC-C-AC-----------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 31307 0.67 0.646268
Target:  5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3'
miRNA:   3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 13572 0.67 0.646268
Target:  5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3'
miRNA:   3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7605 0.67 0.646268
Target:  5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3'
miRNA:   3'- guucGCGCGGG--ACuuCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 27775 0.67 0.646268
Target:  5'- gAAGCGggccaccuCGUCCUGGAGGcgcUGAagccGGAUGCu -3'
miRNA:   3'- gUUCGC--------GCGGGACUUCC---ACU----UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 13793 0.67 0.645151
Target:  5'- gCGAGCGUgacGCCagucugcgUGGAGGUGGcgccaugacgugcAGACGCc -3'
miRNA:   3'- -GUUCGCG---CGGg-------ACUUCCACU-------------UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.