Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11509 | 3' | -54.7 | NC_003085.1 | + | 34355 | 0.67 | 0.645151 |
Target: 5'- -cGGCGCuccauccGCUCgucGAGGGUG-AGGCGCc -3' miRNA: 3'- guUCGCG-------CGGGa--CUUCCACuUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 9394 | 0.67 | 0.633982 |
Target: 5'- aCGAGCgaaacucGUGCCaucGGGGuUGAAGACGCa -3' miRNA: 3'- -GUUCG-------CGCGGgacUUCC-ACUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 17646 | 0.67 | 0.623928 |
Target: 5'- gCAGGCGUgaGCCacgGGAGG--GAGGCGCu -3' miRNA: 3'- -GUUCGCG--CGGga-CUUCCacUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 20088 | 0.67 | 0.623928 |
Target: 5'- --cGCGCGCUgUGAcgugccgcAGGUGgcGGgGCu -3' miRNA: 3'- guuCGCGCGGgACU--------UCCACuuCUgCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 37150 | 0.68 | 0.612763 |
Target: 5'- -cGGCGgGCacCCUGgcGGUGAcggGGACGa -3' miRNA: 3'- guUCGCgCG--GGACuuCCACU---UCUGCg -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 21626 | 0.68 | 0.601617 |
Target: 5'- gGAGUGCGUuguCCUcuGGGUGGAGuuGCa -3' miRNA: 3'- gUUCGCGCG---GGAcuUCCACUUCugCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 42005 | 0.68 | 0.601617 |
Target: 5'- gAGGCGCgacGCCCaccGGGGcauguggaUGGAGACGCg -3' miRNA: 3'- gUUCGCG---CGGGac-UUCC--------ACUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 22303 | 0.68 | 0.601617 |
Target: 5'- -cAGCGuCGCCCgucugguccccGAAGGUGAgcaccugcguGGGCGUc -3' miRNA: 3'- guUCGC-GCGGGa----------CUUCCACU----------UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 15958 | 0.68 | 0.601617 |
Target: 5'- -uGGCGCuCCCUuggccgcugGGAGGUGggG-CGUg -3' miRNA: 3'- guUCGCGcGGGA---------CUUCCACuuCuGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 42880 | 0.68 | 0.579413 |
Target: 5'- gGGGCGUGUC--GAGGGUGAGGccgagguccuGCGCg -3' miRNA: 3'- gUUCGCGCGGgaCUUCCACUUC----------UGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 40807 | 0.68 | 0.578307 |
Target: 5'- aCGGGCugaaaccGUGCUgCUGGcgguAGGUGAGGACGUa -3' miRNA: 3'- -GUUCG-------CGCGG-GACU----UCCACUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 12803 | 0.68 | 0.568374 |
Target: 5'- gCAGGUGCuccacGCCCUGAcGGUccGGgcGGAUGCg -3' miRNA: 3'- -GUUCGCG-----CGGGACUuCCA--CU--UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 30001 | 0.68 | 0.568374 |
Target: 5'- gGAGCG-GCCCUGGGcGGccuUGgcGACGUc -3' miRNA: 3'- gUUCGCgCGGGACUU-CC---ACuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 38547 | 0.68 | 0.557389 |
Target: 5'- -cGGCaaGCCCuUGcuGGUGAGcGACGCg -3' miRNA: 3'- guUCGcgCGGG-ACuuCCACUU-CUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 28121 | 0.69 | 0.53561 |
Target: 5'- -uGGCGCGCuCCaGcAGGGUGAu-GCGCg -3' miRNA: 3'- guUCGCGCG-GGaC-UUCCACUucUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 48768 | 0.69 | 0.524832 |
Target: 5'- uCAGGcCGCGCCC--GAGGcc-GGACGCg -3' miRNA: 3'- -GUUC-GCGCGGGacUUCCacuUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 15075 | 0.69 | 0.514137 |
Target: 5'- gGAGUugGCCCUGGAGGaggGAcGGCGCc -3' miRNA: 3'- gUUCGcgCGGGACUUCCa--CUuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 18671 | 0.69 | 0.503532 |
Target: 5'- gCGAGCGCacuCCugCUGAGGGUGAcgccggucAGugGCc -3' miRNA: 3'- -GUUCGCGc--GG--GACUUCCACU--------UCugCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 24593 | 0.7 | 0.493024 |
Target: 5'- --uGgGCGCCgCUGcAGGUGAGGuuGCc -3' miRNA: 3'- guuCgCGCGG-GACuUCCACUUCugCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 21141 | 0.7 | 0.482617 |
Target: 5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3' miRNA: 3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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