Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11513 | 3' | -51.3 | NC_003085.1 | + | 32045 | 0.66 | 0.910209 |
Target: 5'- aGGcGuAACGGGGGCagucgCCAgccCGCCGAGGa -3' miRNA: 3'- -CCaC-UUGUUCCUGg----GGUa--GUGGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 5357 | 0.66 | 0.908203 |
Target: 5'- --aGGAcCAGGGACucggcgcguccgguCCCGUCACCGucgAGGc -3' miRNA: 3'- ccaCUU-GUUCCUG--------------GGGUAGUGGU---UCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 560 | 0.66 | 0.903422 |
Target: 5'- gGGUGGccgucgaaguGCAGGGcgaGCCCC--CGCCGcAGGg -3' miRNA: 3'- -CCACU----------UGUUCC---UGGGGuaGUGGU-UCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 27277 | 0.66 | 0.903422 |
Target: 5'- --cGGAUAccuGGACCgCUGUCGCgCAGGGg -3' miRNA: 3'- ccaCUUGUu--CCUGG-GGUAGUG-GUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 32307 | 0.66 | 0.903422 |
Target: 5'- uGGUGAGCAcgcGGcGCCCCGU-GCUcuGGg -3' miRNA: 3'- -CCACUUGUu--CC-UGGGGUAgUGGuuCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 9830 | 0.66 | 0.90133 |
Target: 5'- uGUGAagcucgcuuuccaaGCGcgcccuGGACUCCAUgaCGCCGAGGa -3' miRNA: 3'- cCACU--------------UGUu-----CCUGGGGUA--GUGGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 2244 | 0.66 | 0.899212 |
Target: 5'- uGGUGcGCAaugccugcccaccggGGGGCCUCGUCGCgGAc- -3' miRNA: 3'- -CCACuUGU---------------UCCUGGGGUAGUGgUUcc -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 24898 | 0.66 | 0.89635 |
Target: 5'- -----cCAGGGccGCCUCAUCGCCGAGu -3' miRNA: 3'- ccacuuGUUCC--UGGGGUAGUGGUUCc -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 41709 | 0.66 | 0.89635 |
Target: 5'- aGGUGAGCGGcGGCCaagccugggCCAUguUCGAGGa -3' miRNA: 3'- -CCACUUGUUcCUGG---------GGUAguGGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 23924 | 0.66 | 0.888997 |
Target: 5'- --cGAGCAAGGACaCC-UCACgaagCGAGGg -3' miRNA: 3'- ccaCUUGUUCCUGgGGuAGUG----GUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 18558 | 0.66 | 0.888247 |
Target: 5'- aGGUGGcggGCAAGGACggccaagcgcugUCCAUCAgCAucgaccuGGGg -3' miRNA: 3'- -CCACU---UGUUCCUG------------GGGUAGUgGU-------UCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 25446 | 0.67 | 0.865312 |
Target: 5'- cGGUGAAgcccgccguCGGcGugCCCGUCACCGuccGGa -3' miRNA: 3'- -CCACUU---------GUUcCugGGGUAGUGGUu--CC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 26445 | 0.67 | 0.865312 |
Target: 5'- cGGUGGACGucauguaccGCCUCGUCGgCGGGGa -3' miRNA: 3'- -CCACUUGUucc------UGGGGUAGUgGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 31061 | 0.67 | 0.856896 |
Target: 5'- cGGUGGAaucccGGACCgCGUCAUCAAc- -3' miRNA: 3'- -CCACUUguu--CCUGGgGUAGUGGUUcc -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 31755 | 0.67 | 0.83933 |
Target: 5'- --cGAAgcCAAGGGCCCCcgC-CCGAGu -3' miRNA: 3'- ccaCUU--GUUCCUGGGGuaGuGGUUCc -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 34321 | 0.67 | 0.83933 |
Target: 5'- uGUGAaggGCGAGGGCCCUgccccgGUgGCCAuuacgccguAGGg -3' miRNA: 3'- cCACU---UGUUCCUGGGG------UAgUGGU---------UCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 13586 | 0.68 | 0.811287 |
Target: 5'- cGUGGGCAccggAGGcGCgCCAUgaCGCCAAGGc -3' miRNA: 3'- cCACUUGU----UCC-UGgGGUA--GUGGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 40565 | 0.69 | 0.781466 |
Target: 5'- cGGUGAcggccGCGGuGGACCCCAagugcagcaUUGCCGAccGGg -3' miRNA: 3'- -CCACU-----UGUU-CCUGGGGU---------AGUGGUU--CC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 42460 | 0.69 | 0.771183 |
Target: 5'- aGGaGGACAAGGcccGCgCUCAUgcCGCCGAGGg -3' miRNA: 3'- -CCaCUUGUUCC---UG-GGGUA--GUGGUUCC- -5' |
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11513 | 3' | -51.3 | NC_003085.1 | + | 33051 | 0.69 | 0.771183 |
Target: 5'- cGGUGggUuGGGACgCUaccuugcugCAUCGCCAGGa -3' miRNA: 3'- -CCACuuGuUCCUG-GG---------GUAGUGGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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