Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11515 | 5' | -62.4 | NC_003085.1 | + | 42851 | 0.75 | 0.097556 |
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Target: 5'- uCCCGUCACCGagGCUcaAGCCgacgCGGCg- -3' miRNA: 3'- -GGGCAGUGGCagCGG--UCGGa---GCCGgc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 686 | 0.75 | 0.094964 |
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Target: 5'- aCCUGUC-CCG-CGuCCGGCCUCGGgCGc -3' miRNA: 3'- -GGGCAGuGGCaGC-GGUCGGAGCCgGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 45028 | 0.75 | 0.092437 |
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Target: 5'- gCUCGUCagggaugcucuGCCaGUCGCCAGCCUCcuccGCCGg -3' miRNA: 3'- -GGGCAG-----------UGG-CAGCGGUCGGAGc---CGGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 37224 | 0.75 | 0.088527 |
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Target: 5'- cCCCGUCaccgccagggugcccGCCGUCGCCGuGCC-CGGCg- -3' miRNA: 3'- -GGGCAG---------------UGGCAGCGGU-CGGaGCCGgc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 5382 | 0.76 | 0.072403 |
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Target: 5'- uCCCGUCACCGUCGa-GGCCUacGCCGc -3' miRNA: 3'- -GGGCAGUGGCAGCggUCGGAgcCGGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 23007 | 0.79 | 0.041745 |
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Target: 5'- gCCGUCGCCGUCGaCgCGGCCUCGGagggcuucgccCCGg -3' miRNA: 3'- gGGCAGUGGCAGC-G-GUCGGAGCC-----------GGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 42178 | 0.8 | 0.040603 |
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Target: 5'- uCCCGUCGCa---GCCAGCCUCGGCa- -3' miRNA: 3'- -GGGCAGUGgcagCGGUCGGAGCCGgc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 1486 | 1.1 | 0.00019 |
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Target: 5'- gCCCGUCACCGUCGCCAGCCUCGGCCGg -3' miRNA: 3'- -GGGCAGUGGCAGCGGUCGGAGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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