miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11515 5' -62.4 NC_003085.1 + 1486 1.1 0.00019
Target:  5'- gCCCGUCACCGUCGCCAGCCUCGGCCGg -3'
miRNA:   3'- -GGGCAGUGGCAGCGGUCGGAGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 42178 0.8 0.040603
Target:  5'- uCCCGUCGCa---GCCAGCCUCGGCa- -3'
miRNA:   3'- -GGGCAGUGgcagCGGUCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 23007 0.79 0.041745
Target:  5'- gCCGUCGCCGUCGaCgCGGCCUCGGagggcuucgccCCGg -3'
miRNA:   3'- gGGCAGUGGCAGC-G-GUCGGAGCC-----------GGC- -5'
11515 5' -62.4 NC_003085.1 + 5382 0.76 0.072403
Target:  5'- uCCCGUCACCGUCGa-GGCCUacGCCGc -3'
miRNA:   3'- -GGGCAGUGGCAGCggUCGGAgcCGGC- -5'
11515 5' -62.4 NC_003085.1 + 37224 0.75 0.088527
Target:  5'- cCCCGUCaccgccagggugcccGCCGUCGCCGuGCC-CGGCg- -3'
miRNA:   3'- -GGGCAG---------------UGGCAGCGGU-CGGaGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 45028 0.75 0.092437
Target:  5'- gCUCGUCagggaugcucuGCCaGUCGCCAGCCUCcuccGCCGg -3'
miRNA:   3'- -GGGCAG-----------UGG-CAGCGGUCGGAGc---CGGC- -5'
11515 5' -62.4 NC_003085.1 + 686 0.75 0.094964
Target:  5'- aCCUGUC-CCG-CGuCCGGCCUCGGgCGc -3'
miRNA:   3'- -GGGCAGuGGCaGC-GGUCGGAGCCgGC- -5'
11515 5' -62.4 NC_003085.1 + 42851 0.75 0.097556
Target:  5'- uCCCGUCACCGagGCUcaAGCCgacgCGGCg- -3'
miRNA:   3'- -GGGCAGUGGCagCGG--UCGGa---GCCGgc -5'
11515 5' -62.4 NC_003085.1 + 45662 0.74 0.102942
Target:  5'- gCCCaG-CACCGUCGCC-GCUUCGGCg- -3'
miRNA:   3'- -GGG-CaGUGGCAGCGGuCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 12639 0.74 0.114562
Target:  5'- gCgGUcCACCGUC-CCAGCC-CGGCCa -3'
miRNA:   3'- gGgCA-GUGGCAGcGGUCGGaGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 48902 0.73 0.124071
Target:  5'- gCCCGcCAgCCG-CGCC-GCCUCGcGCCGu -3'
miRNA:   3'- -GGGCaGU-GGCaGCGGuCGGAGC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 2138 0.73 0.134306
Target:  5'- uCgCGUCACCGUC-CgGGCCUUGGCa- -3'
miRNA:   3'- -GgGCAGUGGCAGcGgUCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 407 0.72 0.149163
Target:  5'- gCCUG-CGCUcccugGaCGCCAGUCUCGGCCGc -3'
miRNA:   3'- -GGGCaGUGG-----CaGCGGUCGGAGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 24414 0.72 0.151912
Target:  5'- uCCCGUCGCCGUagagCGCCgcggagaugucguuGGCCauggUGGCCu -3'
miRNA:   3'- -GGGCAGUGGCA----GCGG--------------UCGGa---GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 10789 0.72 0.15714
Target:  5'- gUCCGcUUGCCGUCaGCCAguGCCUCgcgGGCCGc -3'
miRNA:   3'- -GGGC-AGUGGCAG-CGGU--CGGAG---CCGGC- -5'
11515 5' -62.4 NC_003085.1 + 11114 0.71 0.169829
Target:  5'- gCCCGUCACaaGUCcggGCCuGUCUCGGCgGu -3'
miRNA:   3'- -GGGCAGUGg-CAG---CGGuCGGAGCCGgC- -5'
11515 5' -62.4 NC_003085.1 + 42967 0.71 0.174258
Target:  5'- uCCCGcaUCAuCCGUgaCGCUGGCCacuucaUCGGCCGa -3'
miRNA:   3'- -GGGC--AGU-GGCA--GCGGUCGG------AGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 41288 0.71 0.174258
Target:  5'- -aCGUCACCGU-GCCAgagcaguccaacGCCUCGGgCGu -3'
miRNA:   3'- ggGCAGUGGCAgCGGU------------CGGAGCCgGC- -5'
11515 5' -62.4 NC_003085.1 + 17056 0.7 0.193019
Target:  5'- gCCGUCGgCGUCGCgGGCC-CGGagCGu -3'
miRNA:   3'- gGGCAGUgGCAGCGgUCGGaGCCg-GC- -5'
11515 5' -62.4 NC_003085.1 + 22851 0.7 0.218937
Target:  5'- gCCGUUgccgcuGCCGUCGCCA-CCgCGGCgGg -3'
miRNA:   3'- gGGCAG------UGGCAGCGGUcGGaGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.