miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11515 5' -62.4 NC_003085.1 + 46832 0.66 0.386023
Target:  5'- cCUCGcCGCCGaguugcgaCGCCagcgucugGGCCUUGGCCu -3'
miRNA:   3'- -GGGCaGUGGCa-------GCGG--------UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 40798 0.67 0.299632
Target:  5'- cCCCGgCGCCcaaggccacgcgcGUCccgGCCGGCCUguaccugacggCGGCCGg -3'
miRNA:   3'- -GGGCaGUGG-------------CAG---CGGUCGGA-----------GCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 41651 0.67 0.307485
Target:  5'- gCCGcUCACCuggUGCUGuGCCUUGGCCa -3'
miRNA:   3'- gGGC-AGUGGca-GCGGU-CGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 16493 0.67 0.314027
Target:  5'- uCCCGUCGCUGacggCGCCgaggaagGGUgUCGGCa- -3'
miRNA:   3'- -GGGCAGUGGCa---GCGG-------UCGgAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 49025 0.67 0.314761
Target:  5'- gUCCuUCACCG-CGaCCAGCgacucUUCGGCCa -3'
miRNA:   3'- -GGGcAGUGGCaGC-GGUCG-----GAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 4432 0.66 0.345154
Target:  5'- gCCCGacggugcuccUCACCGUCGCCG---UCGGCg- -3'
miRNA:   3'- -GGGC----------AGUGGCAGCGGUcggAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 25863 0.66 0.353074
Target:  5'- aUCGUCACCGUCGagCAacucGCCgcCGuGCCGg -3'
miRNA:   3'- gGGCAGUGGCAGCg-GU----CGGa-GC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 42532 0.66 0.361122
Target:  5'- -gCGUgGCCuccCGCUucGCCUCGGCCa -3'
miRNA:   3'- ggGCAgUGGca-GCGGu-CGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 46684 0.66 0.361122
Target:  5'- gCCUGgagCGCCGcCGCU-GCCUgcuucCGGCCa -3'
miRNA:   3'- -GGGCa--GUGGCaGCGGuCGGA-----GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 23817 0.68 0.293322
Target:  5'- gUCCGcagCACCGaaGUCagcgagAGCCUCGGCCc -3'
miRNA:   3'- -GGGCa--GUGGCagCGG------UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 15185 0.68 0.273041
Target:  5'- gCCCGgcugaGCCGgugCGCCAGCgC-CGcGCCGc -3'
miRNA:   3'- -GGGCag---UGGCa--GCGGUCG-GaGC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 48100 0.69 0.2539
Target:  5'- gCCCGUCGCUGUCGUa---CUUGGCgGc -3'
miRNA:   3'- -GGGCAGUGGCAGCGgucgGAGCCGgC- -5'
11515 5' -62.4 NC_003085.1 + 42178 0.8 0.040603
Target:  5'- uCCCGUCGCa---GCCAGCCUCGGCa- -3'
miRNA:   3'- -GGGCAGUGgcagCGGUCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 5382 0.76 0.072403
Target:  5'- uCCCGUCACCGUCGa-GGCCUacGCCGc -3'
miRNA:   3'- -GGGCAGUGGCAGCggUCGGAgcCGGC- -5'
11515 5' -62.4 NC_003085.1 + 45028 0.75 0.092437
Target:  5'- gCUCGUCagggaugcucuGCCaGUCGCCAGCCUCcuccGCCGg -3'
miRNA:   3'- -GGGCAG-----------UGG-CAGCGGUCGGAGc---CGGC- -5'
11515 5' -62.4 NC_003085.1 + 686 0.75 0.094964
Target:  5'- aCCUGUC-CCG-CGuCCGGCCUCGGgCGc -3'
miRNA:   3'- -GGGCAGuGGCaGC-GGUCGGAGCCgGC- -5'
11515 5' -62.4 NC_003085.1 + 45662 0.74 0.102942
Target:  5'- gCCCaG-CACCGUCGCC-GCUUCGGCg- -3'
miRNA:   3'- -GGG-CaGUGGCAGCGGuCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 48902 0.73 0.124071
Target:  5'- gCCCGcCAgCCG-CGCC-GCCUCGcGCCGu -3'
miRNA:   3'- -GGGCaGU-GGCaGCGGuCGGAGC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 407 0.72 0.149163
Target:  5'- gCCUG-CGCUcccugGaCGCCAGUCUCGGCCGc -3'
miRNA:   3'- -GGGCaGUGG-----CaGCGGUCGGAGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 42967 0.71 0.174258
Target:  5'- uCCCGcaUCAuCCGUgaCGCUGGCCacuucaUCGGCCGa -3'
miRNA:   3'- -GGGC--AGU-GGCA--GCGGUCGG------AGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.