miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11516 3' -58.6 NC_003085.1 + 25572 0.66 0.54812
Target:  5'- gCGgGCGCGgacCGCCuuuucgUGCAGUU-UGGCa -3'
miRNA:   3'- gGCaCGCGCa--GCGG------ACGUCAAcGCCG- -5'
11516 3' -58.6 NC_003085.1 + 39497 0.66 0.543919
Target:  5'- -gGUGCGgGaaUCGCCUGCAGgcugGauacgagccuggaGGCg -3'
miRNA:   3'- ggCACGCgC--AGCGGACGUCaa--Cg------------CCG- -5'
11516 3' -58.6 NC_003085.1 + 32132 0.66 0.537637
Target:  5'- -gGUGCGaCGggggCGgCUGguGgcGCGGUg -3'
miRNA:   3'- ggCACGC-GCa---GCgGACguCaaCGCCG- -5'
11516 3' -58.6 NC_003085.1 + 27739 0.66 0.506631
Target:  5'- ---aGCaCGUCGCCgccGUAGUcgguggcgaUGCGGCg -3'
miRNA:   3'- ggcaCGcGCAGCGGa--CGUCA---------ACGCCG- -5'
11516 3' -58.6 NC_003085.1 + 48497 0.66 0.495451
Target:  5'- gCCGUccaugcggaggaaGCcaGCGcCGCCgagGCAGacaaUGCGGCg -3'
miRNA:   3'- -GGCA-------------CG--CGCaGCGGa--CGUCa---ACGCCG- -5'
11516 3' -58.6 NC_003085.1 + 30889 0.67 0.486388
Target:  5'- --uUGCcuUGUCGCCcGCGGUgauugcUGCGGCg -3'
miRNA:   3'- ggcACGc-GCAGCGGaCGUCA------ACGCCG- -5'
11516 3' -58.6 NC_003085.1 + 38927 0.67 0.476412
Target:  5'- gCUGUcGcCGCG-CGCCgucGCAGUgggacgacGCGGCa -3'
miRNA:   3'- -GGCA-C-GCGCaGCGGa--CGUCAa-------CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 23746 0.67 0.466538
Target:  5'- cCCGcUGCGUGgaCGCCUGg----GCGGCg -3'
miRNA:   3'- -GGC-ACGCGCa-GCGGACgucaaCGCCG- -5'
11516 3' -58.6 NC_003085.1 + 37324 0.67 0.437574
Target:  5'- aCGUGUggucuGCGaCGCCUGCcuugagcGCGGCg -3'
miRNA:   3'- gGCACG-----CGCaGCGGACGucaa---CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 46894 0.68 0.42815
Target:  5'- cCCGUGgGCuugugaagGUCGUCaccGCGGcagGCGGCa -3'
miRNA:   3'- -GGCACgCG--------CAGCGGa--CGUCaa-CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 20653 0.68 0.427214
Target:  5'- aCGUGgcuCGCGUCGCgucggagUUGCuGgaGCGGCu -3'
miRNA:   3'- gGCAC---GCGCAGCG-------GACGuCaaCGCCG- -5'
11516 3' -58.6 NC_003085.1 + 45822 0.68 0.427214
Target:  5'- aCCaGUGCaGCGUCccucucgGCCaGcCAGUcGCGGCg -3'
miRNA:   3'- -GG-CACG-CGCAG-------CGGaC-GUCAaCGCCG- -5'
11516 3' -58.6 NC_003085.1 + 44319 0.68 0.418847
Target:  5'- uCCGaGCGCGacgCgGCCcgGCAGgaaGCGGCc -3'
miRNA:   3'- -GGCaCGCGCa--G-CGGa-CGUCaa-CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 37974 0.68 0.418847
Target:  5'- -gGUGCGCcaugucagCGUCUGCGGcgGUGGUg -3'
miRNA:   3'- ggCACGCGca------GCGGACGUCaaCGCCG- -5'
11516 3' -58.6 NC_003085.1 + 42079 0.68 0.409668
Target:  5'- uCCGUGcCGaCGcCGCCgggGCAGgaacaCGGCg -3'
miRNA:   3'- -GGCAC-GC-GCaGCGGa--CGUCaac--GCCG- -5'
11516 3' -58.6 NC_003085.1 + 40334 0.68 0.400616
Target:  5'- gCUG-GCGCGU-GCCU-CAGUggGCGGUg -3'
miRNA:   3'- -GGCaCGCGCAgCGGAcGUCAa-CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 23322 0.68 0.400616
Target:  5'- uUGUGCGCGggCGgC-GCGGUgcgaagcGCGGCg -3'
miRNA:   3'- gGCACGCGCa-GCgGaCGUCAa------CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 26708 0.68 0.391692
Target:  5'- cUCGaGCGCG-CGCaggGCGGUgacggcGCGGCg -3'
miRNA:   3'- -GGCaCGCGCaGCGga-CGUCAa-----CGCCG- -5'
11516 3' -58.6 NC_003085.1 + 12296 0.69 0.374237
Target:  5'- aCG-GCGCgGUgGUCcGCugGGUUGCGGCg -3'
miRNA:   3'- gGCaCGCG-CAgCGGaCG--UCAACGCCG- -5'
11516 3' -58.6 NC_003085.1 + 36443 0.69 0.36571
Target:  5'- aCCGUGCggaggGCGgCGCCUcauggcgagGUAGUgccacugGCGGCu -3'
miRNA:   3'- -GGCACG-----CGCaGCGGA---------CGUCAa------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.