Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11518 | 3' | -56.7 | NC_003085.1 | + | 21888 | 0.68 | 0.503739 |
Target: 5'- --aUGAGCucGGCGGCCuuGgGCGCCa -3' miRNA: 3'- gaaGCUCGu-CCGCUGGugCaUGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 41351 | 0.68 | 0.5141 |
Target: 5'- cCUUCuacGGCAGGCcgGGCCGCGUcacccACGUCa -3' miRNA: 3'- -GAAGc--UCGUCCG--CUGGUGCA-----UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 31968 | 0.68 | 0.5141 |
Target: 5'- --gCGGGCuGGCGACUGCccccguUACGCCu -3' miRNA: 3'- gaaGCUCGuCCGCUGGUGc-----AUGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 26679 | 0.68 | 0.52245 |
Target: 5'- --aCGAGgAGGCGACggucgaagaagaGCGUGuCGCCGc -3' miRNA: 3'- gaaGCUCgUCCGCUGg-----------UGCAU-GCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 12798 | 0.67 | 0.535072 |
Target: 5'- -gUCGGGCAGGUGcuCCACGcccugACGguCCGg -3' miRNA: 3'- gaAGCUCGUCCGCu-GGUGCa----UGC--GGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 36951 | 0.67 | 0.535072 |
Target: 5'- -cUCGA-CAGGCagggccgcggGGCCAUGUugGCGCCGc -3' miRNA: 3'- gaAGCUcGUCCG----------CUGGUGCA--UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 23651 | 0.67 | 0.535072 |
Target: 5'- --gCGAGCAGGCcGCgCagGCGaACGCCGc -3' miRNA: 3'- gaaGCUCGUCCGcUG-G--UGCaUGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 36017 | 0.67 | 0.545672 |
Target: 5'- -cUUG-GCGgauGGCGGCCAUGggcACGCCGu -3' miRNA: 3'- gaAGCuCGU---CCGCUGGUGCa--UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 5776 | 0.67 | 0.567063 |
Target: 5'- -cUUGAGCGGcGCGugCuC-UACGCCGu -3' miRNA: 3'- gaAGCUCGUC-CGCugGuGcAUGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 12034 | 0.67 | 0.567063 |
Target: 5'- --cCGGuGCuGcGCGACUuCGUGCGCCGc -3' miRNA: 3'- gaaGCU-CGuC-CGCUGGuGCAUGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 35970 | 0.67 | 0.567063 |
Target: 5'- uUUCGcGUAGGgGGCCAgGccgACGCCc -3' miRNA: 3'- gAAGCuCGUCCgCUGGUgCa--UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 12094 | 0.67 | 0.577841 |
Target: 5'- ---gGGGCGGGUGACgCGCGcaagucggACGCCc -3' miRNA: 3'- gaagCUCGUCCGCUG-GUGCa-------UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 30556 | 0.67 | 0.577841 |
Target: 5'- -gUCGAGUccAGGCG-UCGCGUccagguCGCCGc -3' miRNA: 3'- gaAGCUCG--UCCGCuGGUGCAu-----GCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 8524 | 0.67 | 0.577841 |
Target: 5'- --gCGGgcGCAGGCGAagGCGgugACGCCa -3' miRNA: 3'- gaaGCU--CGUCCGCUggUGCa--UGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 18883 | 0.67 | 0.582164 |
Target: 5'- -aUgGAGcCGGGCGAgguccacacgcucuaCgGCGUACGCCu -3' miRNA: 3'- gaAgCUC-GUCCGCU---------------GgUGCAUGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 23150 | 0.67 | 0.588662 |
Target: 5'- gCUUCGAGCAGGUGG---UGU-CGCCc -3' miRNA: 3'- -GAAGCUCGUCCGCUgguGCAuGCGGc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 17642 | 0.67 | 0.588662 |
Target: 5'- --cUGcGCAGGCGugaGCCACGggagggagGCGCUGg -3' miRNA: 3'- gaaGCuCGUCCGC---UGGUGCa-------UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 8838 | 0.67 | 0.588662 |
Target: 5'- gCUgcgCGAGCaggagGGGCGGCCAUG-ACGUg- -3' miRNA: 3'- -GAa--GCUCG-----UCCGCUGGUGCaUGCGgc -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 47299 | 0.66 | 0.596259 |
Target: 5'- aCUUCGAcGCcuuGGCGACguUGUccaccaucuccagcGCGCCGc -3' miRNA: 3'- -GAAGCU-CGu--CCGCUGguGCA--------------UGCGGC- -5' |
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11518 | 3' | -56.7 | NC_003085.1 | + | 36654 | 0.66 | 0.598432 |
Target: 5'- ---aGGGCguauaGGGCGACCuugucucacauagGCGgGCGCCGg -3' miRNA: 3'- gaagCUCG-----UCCGCUGG-------------UGCaUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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