miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 3445 1.1 0.000638
Target:  5'- aCUUCGAGCAGGCGACCACGUACGCCGa -3'
miRNA:   3'- -GAAGCUCGUCCGCUGGUGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 29819 0.73 0.243694
Target:  5'- -gUgGGGCGcgacGGCGGCCACGUccugggcgacgACGCCGa -3'
miRNA:   3'- gaAgCUCGU----CCGCUGGUGCA-----------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 29209 0.73 0.256498
Target:  5'- --gCGAGUAGGCGgacucaaucGCCugGUuccGCGCCGc -3'
miRNA:   3'- gaaGCUCGUCCGC---------UGGugCA---UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 26708 0.73 0.256498
Target:  5'- -cUCGAGCGcgcgcagggcGGUGACgGCGcgGCGCCGg -3'
miRNA:   3'- gaAGCUCGU----------CCGCUGgUGCa-UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 39620 0.72 0.290913
Target:  5'- --cCGAGCAGGUGGCCGCaGgagugGCGCa- -3'
miRNA:   3'- gaaGCUCGUCCGCUGGUG-Ca----UGCGgc -5'
11518 3' -56.7 NC_003085.1 + 8199 0.71 0.336851
Target:  5'- -cUUGAGCAGGUccACCACGUcaucaGCGCCc -3'
miRNA:   3'- gaAGCUCGUCCGc-UGGUGCA-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 27470 0.71 0.345002
Target:  5'- --gCGGGCAGGU-ACCACGcGCGCgCGg -3'
miRNA:   3'- gaaGCUCGUCCGcUGGUGCaUGCG-GC- -5'
11518 3' -56.7 NC_003085.1 + 1787 0.71 0.345002
Target:  5'- --gUGGGaCAGGUGGCC-CGUugGCUGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGuGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 6317 0.7 0.379008
Target:  5'- -gUCGuGUAGGCgucGACCAUGUcggaGCGCCu -3'
miRNA:   3'- gaAGCuCGUCCG---CUGGUGCA----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 7356 0.7 0.379008
Target:  5'- -gUCGAGCuuGGCGGCg--GUGCGCCa -3'
miRNA:   3'- gaAGCUCGu-CCGCUGgugCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 10595 0.7 0.396833
Target:  5'- aCUUCGAGUucuucGGGCGugcgcuuCCGCGgauucuccagUGCGCCGc -3'
miRNA:   3'- -GAAGCUCG-----UCCGCu------GGUGC----------AUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 33926 0.7 0.396833
Target:  5'- --cCGuGCAGuuGACUACGUGgGCCGg -3'
miRNA:   3'- gaaGCuCGUCcgCUGGUGCAUgCGGC- -5'
11518 3' -56.7 NC_003085.1 + 16190 0.69 0.434057
Target:  5'- gUUCGAGguGagccGUGACCGCGcuccuCGCCGu -3'
miRNA:   3'- gAAGCUCguC----CGCUGGUGCau---GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 19072 0.69 0.434057
Target:  5'- ---gGAGCAGGCGccggGCCcggacggaGUGCGCCGc -3'
miRNA:   3'- gaagCUCGUCCGC----UGGug------CAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 28675 0.69 0.434057
Target:  5'- --gCGAGCGccacaccaccGGCGuguccaccGCCAUGUGCGCCu -3'
miRNA:   3'- gaaGCUCGU----------CCGC--------UGGUGCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 20722 0.69 0.453413
Target:  5'- cCUUCcAGCAGGCG-CUggaGUACGCCc -3'
miRNA:   3'- -GAAGcUCGUCCGCuGGug-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 34549 0.69 0.453413
Target:  5'- --gCGAGCGccaccagccGGC--CCGCGUGCGCCGc -3'
miRNA:   3'- gaaGCUCGU---------CCGcuGGUGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 21476 0.68 0.473229
Target:  5'- -cUCGgacAGCAGGCGGCCGauggugaGUcCGCUGg -3'
miRNA:   3'- gaAGC---UCGUCCGCUGGUg------CAuGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 17102 0.68 0.473229
Target:  5'- --aCG-GCAGG-GACCACGgcaaggACGCCu -3'
miRNA:   3'- gaaGCuCGUCCgCUGGUGCa-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 4542 0.68 0.502708
Target:  5'- --gCGGGCAcGGCGaACCccggagaACaGUGCGCCGa -3'
miRNA:   3'- gaaGCUCGU-CCGC-UGG-------UG-CAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.