miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 744 0.66 0.599519
Target:  5'- --gCGGGaCAGGUGGCCGgCG-ACGuCCGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGU-GCaUGC-GGC- -5'
11518 3' -56.7 NC_003085.1 + 920 0.66 0.643132
Target:  5'- cCUUCGGGCAGcGCGACgugagagaCGCGcucgACGaCCu -3'
miRNA:   3'- -GAAGCUCGUC-CGCUG--------GUGCa---UGC-GGc -5'
11518 3' -56.7 NC_003085.1 + 1787 0.71 0.345002
Target:  5'- --gUGGGaCAGGUGGCC-CGUugGCUGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGuGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 3445 1.1 0.000638
Target:  5'- aCUUCGAGCAGGCGACCACGUACGCCGa -3'
miRNA:   3'- -GAAGCUCGUCCGCUGGUGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 3960 0.66 0.616945
Target:  5'- --aCGAGCAGuGCcACCGCGacagacggcgggcGCGCCGu -3'
miRNA:   3'- gaaGCUCGUC-CGcUGGUGCa------------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 4542 0.68 0.502708
Target:  5'- --gCGGGCAcGGCGaACCccggagaACaGUGCGCCGa -3'
miRNA:   3'- gaaGCUCGU-CCGC-UGG-------UG-CAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 5776 0.67 0.567063
Target:  5'- -cUUGAGCGGcGCGugCuC-UACGCCGu -3'
miRNA:   3'- gaAGCUCGUC-CGCugGuGcAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 6317 0.7 0.379008
Target:  5'- -gUCGuGUAGGCgucGACCAUGUcggaGCGCCu -3'
miRNA:   3'- gaAGCuCGUCCG---CUGGUGCA----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 7356 0.7 0.379008
Target:  5'- -gUCGAGCuuGGCGGCg--GUGCGCCa -3'
miRNA:   3'- gaAGCUCGu-CCGCUGgugCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8199 0.71 0.336851
Target:  5'- -cUUGAGCAGGUccACCACGUcaucaGCGCCc -3'
miRNA:   3'- gaAGCUCGUCCGc-UGGUGCA-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8524 0.67 0.577841
Target:  5'- --gCGGgcGCAGGCGAagGCGgugACGCCa -3'
miRNA:   3'- gaaGCU--CGUCCGCUggUGCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8702 0.66 0.614763
Target:  5'- aCUUCGGGUGGGCcucGACgaaCACGUggcagugcuaccugcGCGCCu -3'
miRNA:   3'- -GAAGCUCGUCCG---CUG---GUGCA---------------UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8838 0.67 0.588662
Target:  5'- gCUgcgCGAGCaggagGGGCGGCCAUG-ACGUg- -3'
miRNA:   3'- -GAa--GCUCG-----UCCGCUGGUGCaUGCGgc -5'
11518 3' -56.7 NC_003085.1 + 10548 0.66 0.63222
Target:  5'- --gCGcAGCAGGuCGGCCAgcCGagggGCGCCa -3'
miRNA:   3'- gaaGC-UCGUCC-GCUGGU--GCa---UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 10595 0.7 0.396833
Target:  5'- aCUUCGAGUucuucGGGCGugcgcuuCCGCGgauucuccagUGCGCCGc -3'
miRNA:   3'- -GAAGCUCG-----UCCGCu------GGUGC----------AUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 11896 0.66 0.599519
Target:  5'- --cCGAGUucauggccAGGCGcuCCACGUuuGCCGa -3'
miRNA:   3'- gaaGCUCG--------UCCGCu-GGUGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 12034 0.67 0.567063
Target:  5'- --cCGGuGCuGcGCGACUuCGUGCGCCGc -3'
miRNA:   3'- gaaGCU-CGuC-CGCUGGuGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 12094 0.67 0.577841
Target:  5'- ---gGGGCGGGUGACgCGCGcaagucggACGCCc -3'
miRNA:   3'- gaagCUCGUCCGCUG-GUGCa-------UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 12798 0.67 0.535072
Target:  5'- -gUCGGGCAGGUGcuCCACGcccugACGguCCGg -3'
miRNA:   3'- gaAGCUCGUCCGCu-GGUGCa----UGC--GGC- -5'
11518 3' -56.7 NC_003085.1 + 13370 0.66 0.610404
Target:  5'- ---aGAGguGGCuGACCACGUcaagaaguuCGUCGg -3'
miRNA:   3'- gaagCUCguCCG-CUGGUGCAu--------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.