miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 18883 0.67 0.582164
Target:  5'- -aUgGAGcCGGGCGAgguccacacgcucuaCgGCGUACGCCu -3'
miRNA:   3'- gaAgCUC-GUCCGCU---------------GgUGCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 23651 0.67 0.535072
Target:  5'- --gCGAGCAGGCcGCgCagGCGaACGCCGc -3'
miRNA:   3'- gaaGCUCGUCCGcUG-G--UGCaUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36951 0.67 0.535072
Target:  5'- -cUCGA-CAGGCagggccgcggGGCCAUGUugGCGCCGc -3'
miRNA:   3'- gaAGCUcGUCCG----------CUGGUGCA--UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36017 0.67 0.545672
Target:  5'- -cUUG-GCGgauGGCGGCCAUGggcACGCCGu -3'
miRNA:   3'- gaAGCuCGU---CCGCUGGUGCa--UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 35970 0.67 0.567063
Target:  5'- uUUCGcGUAGGgGGCCAgGccgACGCCc -3'
miRNA:   3'- gAAGCuCGUCCgCUGGUgCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 12034 0.67 0.567063
Target:  5'- --cCGGuGCuGcGCGACUuCGUGCGCCGc -3'
miRNA:   3'- gaaGCU-CGuC-CGCUGGuGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 5776 0.67 0.567063
Target:  5'- -cUUGAGCGGcGCGugCuC-UACGCCGu -3'
miRNA:   3'- gaAGCUCGUC-CGCugGuGcAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 8524 0.67 0.577841
Target:  5'- --gCGGgcGCAGGCGAagGCGgugACGCCa -3'
miRNA:   3'- gaaGCU--CGUCCGCUggUGCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 12094 0.67 0.577841
Target:  5'- ---gGGGCGGGUGACgCGCGcaagucggACGCCc -3'
miRNA:   3'- gaagCUCGUCCGCUG-GUGCa-------UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 12798 0.67 0.535072
Target:  5'- -gUCGGGCAGGUGcuCCACGcccugACGguCCGg -3'
miRNA:   3'- gaAGCUCGUCCGCu-GGUGCa----UGC--GGC- -5'
11518 3' -56.7 NC_003085.1 + 31968 0.68 0.5141
Target:  5'- --gCGGGCuGGCGACUGCccccguUACGCCu -3'
miRNA:   3'- gaaGCUCGuCCGCUGGUGc-----AUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 41351 0.68 0.5141
Target:  5'- cCUUCuacGGCAGGCcgGGCCGCGUcacccACGUCa -3'
miRNA:   3'- -GAAGc--UCGUCCG--CUGGUGCA-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 26708 0.73 0.256498
Target:  5'- -cUCGAGCGcgcgcagggcGGUGACgGCGcgGCGCCGg -3'
miRNA:   3'- gaAGCUCGU----------CCGCUGgUGCa-UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 39620 0.72 0.290913
Target:  5'- --cCGAGCAGGUGGCCGCaGgagugGCGCa- -3'
miRNA:   3'- gaaGCUCGUCCGCUGGUG-Ca----UGCGgc -5'
11518 3' -56.7 NC_003085.1 + 1787 0.71 0.345002
Target:  5'- --gUGGGaCAGGUGGCC-CGUugGCUGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGuGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 19072 0.69 0.434057
Target:  5'- ---gGAGCAGGCGccggGCCcggacggaGUGCGCCGc -3'
miRNA:   3'- gaagCUCGUCCGC----UGGug------CAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 16190 0.69 0.434057
Target:  5'- gUUCGAGguGagccGUGACCGCGcuccuCGCCGu -3'
miRNA:   3'- gAAGCUCguC----CGCUGGUGCau---GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 20722 0.69 0.453413
Target:  5'- cCUUCcAGCAGGCG-CUggaGUACGCCc -3'
miRNA:   3'- -GAAGcUCGUCCGCuGGug-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 34549 0.69 0.453413
Target:  5'- --gCGAGCGccaccagccGGC--CCGCGUGCGCCGc -3'
miRNA:   3'- gaaGCUCGU---------CCGcuGGUGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 17102 0.68 0.473229
Target:  5'- --aCG-GCAGG-GACCACGgcaaggACGCCu -3'
miRNA:   3'- gaaGCuCGUCCgCUGGUGCa-----UGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.