miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 13814 0.66 0.643132
Target:  5'- -gUgGAGguGGCG-CCAUGacgugcagACGCCGc -3'
miRNA:   3'- gaAgCUCguCCGCuGGUGCa-------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 15843 0.66 0.621307
Target:  5'- gCUUCGGuGCaAGGCGAUUGaGUugaGCGCCGa -3'
miRNA:   3'- -GAAGCU-CG-UCCGCUGGUgCA---UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 16190 0.69 0.434057
Target:  5'- gUUCGAGguGagccGUGACCGCGcuccuCGCCGu -3'
miRNA:   3'- gAAGCUCguC----CGCUGGUGCau---GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 16965 0.66 0.610404
Target:  5'- --gCGAGguGGCucaucgcucGGCCuCGUugGCCu -3'
miRNA:   3'- gaaGCUCguCCG---------CUGGuGCAugCGGc -5'
11518 3' -56.7 NC_003085.1 + 17102 0.68 0.473229
Target:  5'- --aCG-GCAGG-GACCACGgcaaggACGCCu -3'
miRNA:   3'- gaaGCuCGUCCgCUGGUGCa-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 17380 0.66 0.610404
Target:  5'- --gCGAGCAGGacucguguUGGCgaGCGUAcCGCCGg -3'
miRNA:   3'- gaaGCUCGUCC--------GCUGg-UGCAU-GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 17642 0.67 0.588662
Target:  5'- --cUGcGCAGGCGugaGCCACGggagggagGCGCUGg -3'
miRNA:   3'- gaaGCuCGUCCGC---UGGUGCa-------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 18883 0.67 0.582164
Target:  5'- -aUgGAGcCGGGCGAgguccacacgcucuaCgGCGUACGCCu -3'
miRNA:   3'- gaAgCUC-GUCCGCU---------------GgUGCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 19072 0.69 0.434057
Target:  5'- ---gGAGCAGGCGccggGCCcggacggaGUGCGCCGc -3'
miRNA:   3'- gaagCUCGUCCGC----UGGug------CAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 20722 0.69 0.453413
Target:  5'- cCUUCcAGCAGGCG-CUggaGUACGCCc -3'
miRNA:   3'- -GAAGcUCGUCCGCuGGug-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 20933 0.66 0.599519
Target:  5'- --cUGGGUGGGCGGCaccgcaGCGgcgagcucgGCGCCGg -3'
miRNA:   3'- gaaGCUCGUCCGCUGg-----UGCa--------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 21476 0.68 0.473229
Target:  5'- -cUCGgacAGCAGGCGGCCGauggugaGUcCGCUGg -3'
miRNA:   3'- gaAGC---UCGUCCGCUGGUg------CAuGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 21888 0.68 0.503739
Target:  5'- --aUGAGCucGGCGGCCuuGgGCGCCa -3'
miRNA:   3'- gaaGCUCGu-CCGCUGGugCaUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 23150 0.67 0.588662
Target:  5'- gCUUCGAGCAGGUGG---UGU-CGCCc -3'
miRNA:   3'- -GAAGCUCGUCCGCUgguGCAuGCGGc -5'
11518 3' -56.7 NC_003085.1 + 23651 0.67 0.535072
Target:  5'- --gCGAGCAGGCcGCgCagGCGaACGCCGc -3'
miRNA:   3'- gaaGCUCGUCCGcUG-G--UGCaUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 25564 0.66 0.621307
Target:  5'- ---aGaAGCAGGCGGgCGCGgacCGCCu -3'
miRNA:   3'- gaagC-UCGUCCGCUgGUGCau-GCGGc -5'
11518 3' -56.7 NC_003085.1 + 26679 0.68 0.52245
Target:  5'- --aCGAGgAGGCGACggucgaagaagaGCGUGuCGCCGc -3'
miRNA:   3'- gaaGCUCgUCCGCUGg-----------UGCAU-GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 26708 0.73 0.256498
Target:  5'- -cUCGAGCGcgcgcagggcGGUGACgGCGcgGCGCCGg -3'
miRNA:   3'- gaAGCUCGU----------CCGCUGgUGCa-UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 27468 0.66 0.643132
Target:  5'- uUUCGuGCGGGaGGCCACcu-CGUCGg -3'
miRNA:   3'- gAAGCuCGUCCgCUGGUGcauGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 27470 0.71 0.345002
Target:  5'- --gCGGGCAGGU-ACCACGcGCGCgCGg -3'
miRNA:   3'- gaaGCUCGUCCGcUGGUGCaUGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.