miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 42104 0.67 0.274306
Target:  5'- cCCGGcUGGagagaAGGCGC-CCUCGUccgUGCCg -3'
miRNA:   3'- -GGCCcGCCg----UUCGCGcGGAGCG---ACGG- -5'
11519 3' -63.1 NC_003085.1 + 48958 0.67 0.274306
Target:  5'- uCCGGucCGGCccGCGCGCCUucaucuccgCGCUgaugGCCg -3'
miRNA:   3'- -GGCCc-GCCGuuCGCGCGGA---------GCGA----CGG- -5'
11519 3' -63.1 NC_003085.1 + 45771 0.67 0.273644
Target:  5'- aCCGGacGCGGCGucAGgacucgcCGCGCCgUCcCUGCCu -3'
miRNA:   3'- -GGCC--CGCCGU--UC-------GCGCGG-AGcGACGG- -5'
11519 3' -63.1 NC_003085.1 + 14394 0.67 0.261295
Target:  5'- cCCGGGagaGGCGggAGCGCaucGCCUUGgagaUGCUc -3'
miRNA:   3'- -GGCCCg--CCGU--UCGCG---CGGAGCg---ACGG- -5'
11519 3' -63.1 NC_003085.1 + 48600 0.67 0.261295
Target:  5'- aCUGGaaGGCccGCGC-CCUCGCcGCCg -3'
miRNA:   3'- -GGCCcgCCGuuCGCGcGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 22440 0.67 0.261295
Target:  5'- -gGGGCGGUAcacguAGCgGCGCCUCaCgGCa -3'
miRNA:   3'- ggCCCGCCGU-----UCG-CGCGGAGcGaCGg -5'
11519 3' -63.1 NC_003085.1 + 28917 0.67 0.261295
Target:  5'- gUCGGGCGGCGcgGGUGCuuGCUUCcCcaugGCCu -3'
miRNA:   3'- -GGCCCGCCGU--UCGCG--CGGAGcGa---CGG- -5'
11519 3' -63.1 NC_003085.1 + 12339 0.67 0.261295
Target:  5'- cCUGGGCaagGGCA--CGCGCCacauggugUCGCUGUg -3'
miRNA:   3'- -GGCCCG---CCGUucGCGCGG--------AGCGACGg -5'
11519 3' -63.1 NC_003085.1 + 28285 0.67 0.25498
Target:  5'- gUGGaGCGGCGAGUaccagGCCUCGCaGCa -3'
miRNA:   3'- gGCC-CGCCGUUCGcg---CGGAGCGaCGg -5'
11519 3' -63.1 NC_003085.1 + 1540 0.67 0.25498
Target:  5'- aCGGGCGGCGacuuGGgGUGUCaugCGCUcCCc -3'
miRNA:   3'- gGCCCGCCGU----UCgCGCGGa--GCGAcGG- -5'
11519 3' -63.1 NC_003085.1 + 11663 0.67 0.25498
Target:  5'- gCCGGGUGGCcgaggAGGUGgGgCUgugaGUUGCCg -3'
miRNA:   3'- -GGCCCGCCG-----UUCGCgCgGAg---CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 1418 0.67 0.254355
Target:  5'- cCCaGGCGG-AAGCcguccguacuccaGCGCCaUCGCagUGCCa -3'
miRNA:   3'- -GGcCCGCCgUUCG-------------CGCGG-AGCG--ACGG- -5'
11519 3' -63.1 NC_003085.1 + 45850 0.68 0.248791
Target:  5'- aCGGcGCGGCGAGUccugacgccGCGUC-CGgUGCUg -3'
miRNA:   3'- gGCC-CGCCGUUCG---------CGCGGaGCgACGG- -5'
11519 3' -63.1 NC_003085.1 + 8709 0.68 0.246959
Target:  5'- gUGGGCcucgacgaacacguGGCAGugcuaccuGCGCGCCuUCGUgGCCa -3'
miRNA:   3'- gGCCCG--------------CCGUU--------CGCGCGG-AGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 828 0.68 0.242726
Target:  5'- gCCGcaGGuCGuCGAGCGCGUCUCucacgucgcGCUGCCc -3'
miRNA:   3'- -GGC--CC-GCcGUUCGCGCGGAG---------CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 3652 0.68 0.242726
Target:  5'- gCCGccucGGCaGCgAGGCGCGCUUgCGCccgGCCg -3'
miRNA:   3'- -GGC----CCGcCG-UUCGCGCGGA-GCGa--CGG- -5'
11519 3' -63.1 NC_003085.1 + 12826 0.68 0.236785
Target:  5'- uCCGGGCGGau-GCGCuGUUggcCGCcaaUGCCa -3'
miRNA:   3'- -GGCCCGCCguuCGCG-CGGa--GCG---ACGG- -5'
11519 3' -63.1 NC_003085.1 + 41525 0.68 0.236785
Target:  5'- aCCGGGCgcuaccGGUgGAGUGaCGUCU-GCUGCCg -3'
miRNA:   3'- -GGCCCG------CCG-UUCGC-GCGGAgCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 6937 0.68 0.230967
Target:  5'- uUCGGGCGGaCGGGUaGUGCUgCGCgGCUu -3'
miRNA:   3'- -GGCCCGCC-GUUCG-CGCGGaGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 39493 0.68 0.230967
Target:  5'- gUCGaGGCGcucgagaaGCcGGUGCGCCUCGUcGCUg -3'
miRNA:   3'- -GGC-CCGC--------CGuUCGCGCGGAGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.