miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 48968 0.66 0.309093
Target:  5'- gCGGcGCGGCuGGCGgGCCaaUGCU-CCg -3'
miRNA:   3'- gGCC-CGCCGuUCGCgCGGa-GCGAcGG- -5'
11519 3' -63.1 NC_003085.1 + 48958 0.67 0.274306
Target:  5'- uCCGGucCGGCccGCGCGCCUucaucuccgCGCUgaugGCCg -3'
miRNA:   3'- -GGCCc-GCCGuuCGCGCGGA---------GCGA----CGG- -5'
11519 3' -63.1 NC_003085.1 + 48600 0.67 0.281004
Target:  5'- gCCGGGaagGcGCGAGCgauGCGCUUgGC-GCCg -3'
miRNA:   3'- -GGCCCg--C-CGUUCG---CGCGGAgCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 48600 0.67 0.261295
Target:  5'- aCUGGaaGGCccGCGC-CCUCGCcGCCg -3'
miRNA:   3'- -GGCCcgCCGuuCGCGcGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 48383 0.72 0.120818
Target:  5'- cCUGaGcGCGGCGAGCaGCGCCgcaUUGuCUGCCu -3'
miRNA:   3'- -GGC-C-CGCCGUUCG-CGCGG---AGC-GACGG- -5'
11519 3' -63.1 NC_003085.1 + 47546 0.66 0.309093
Target:  5'- cCCGcGaGCGauGCGcAGCGCGCUgaacguuuuccCGCUGCCu -3'
miRNA:   3'- -GGC-C-CGC--CGU-UCGCGCGGa----------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 46819 0.66 0.301875
Target:  5'- uUGGGCGGCAu---CaCCUCGCcGCCg -3'
miRNA:   3'- gGCCCGCCGUucgcGcGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 46811 0.84 0.013836
Target:  5'- uUCGGGCGGCuggcAGCGCGCgCgaaggCGCUGCCc -3'
miRNA:   3'- -GGCCCGCCGu---UCGCGCG-Ga----GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 46738 0.66 0.309093
Target:  5'- uCCaGGCGGC-GGCgaaGCGCCUCGgcaucaCUGgCa -3'
miRNA:   3'- -GGcCCGCCGuUCG---CGCGGAGC------GACgG- -5'
11519 3' -63.1 NC_003085.1 + 46709 0.7 0.178738
Target:  5'- uCCGGccaGCGGaguccuuGGGCaGCGCCUucgcgcgCGCUGCCa -3'
miRNA:   3'- -GGCC---CGCCg------UUCG-CGCGGA-------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 46640 0.66 0.338493
Target:  5'- gCCGGGCaGaCGuguuGCcagugaugccgagGCGCUUCGCcGCCg -3'
miRNA:   3'- -GGCCCGcC-GUu---CG-------------CGCGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 45979 0.74 0.089809
Target:  5'- -gGGGCGGCAGauGCGCGCCUCuccccacaggGUgacgacgGCCg -3'
miRNA:   3'- ggCCCGCCGUU--CGCGCGGAG----------CGa------CGG- -5'
11519 3' -63.1 NC_003085.1 + 45850 0.68 0.248791
Target:  5'- aCGGcGCGGCGAGUccugacgccGCGUC-CGgUGCUg -3'
miRNA:   3'- gGCC-CGCCGUUCG---------CGCGGaGCgACGG- -5'
11519 3' -63.1 NC_003085.1 + 45771 0.67 0.273644
Target:  5'- aCCGGacGCGGCGucAGgacucgcCGCGCCgUCcCUGCCu -3'
miRNA:   3'- -GGCC--CGCCGU--UC-------GCGCGG-AGcGACGG- -5'
11519 3' -63.1 NC_003085.1 + 45439 0.68 0.219691
Target:  5'- uCUGGGUGGgcCGGGCG-GuCCagGCUGCCa -3'
miRNA:   3'- -GGCCCGCC--GUUCGCgC-GGagCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 44948 0.7 0.173281
Target:  5'- gCCGGGCucaaacgccucguuGGCccagucgccAGCGCGCUUCGUcaccgUGCCc -3'
miRNA:   3'- -GGCCCG--------------CCGu--------UCGCGCGGAGCG-----ACGG- -5'
11519 3' -63.1 NC_003085.1 + 44336 0.66 0.309093
Target:  5'- cCUGGGCGGCGAcGCGgGagaggGCgGCCa -3'
miRNA:   3'- -GGCCCGCCGUU-CGCgCggag-CGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 43638 0.68 0.225269
Target:  5'- gCCGGGuCGGUGAcGCGgGCCuaucUCGCgcaaGCUg -3'
miRNA:   3'- -GGCCC-GCCGUU-CGCgCGG----AGCGa---CGG- -5'
11519 3' -63.1 NC_003085.1 + 43195 0.66 0.331532
Target:  5'- gCGGuacuucGCGGCGuccucgugcAGCGCGCguacUUCGgaGCCa -3'
miRNA:   3'- gGCC------CGCCGU---------UCGCGCG----GAGCgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 43117 0.72 0.127435
Target:  5'- gCCGGGaacagccuUGGCGuagAGCGCGCCcaUGCUGCg -3'
miRNA:   3'- -GGCCC--------GCCGU---UCGCGCGGa-GCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.