miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 40876 0.66 0.339273
Target:  5'- gCCGGGaCGcGCGuggccuuGgGCGCCggGgUGCCg -3'
miRNA:   3'- -GGCCC-GC-CGUu------CgCGCGGagCgACGG- -5'
11519 3' -63.1 NC_003085.1 + 23082 0.67 0.274306
Target:  5'- uCUGGGCgccaggacugcGGCGcGCGCaCCUCugGCUGCUu -3'
miRNA:   3'- -GGCCCG-----------CCGUuCGCGcGGAG--CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 22440 0.67 0.261295
Target:  5'- -gGGGCGGUAcacguAGCgGCGCCUCaCgGCa -3'
miRNA:   3'- ggCCCGCCGU-----UCG-CGCGGAGcGaCGg -5'
11519 3' -63.1 NC_003085.1 + 46811 0.84 0.013836
Target:  5'- uUCGGGCGGCuggcAGCGCGCgCgaaggCGCUGCCc -3'
miRNA:   3'- -GGCCCGCCGu---UCGCGCG-Ga----GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 19141 0.66 0.324676
Target:  5'- uCCGGGCccGGCGccugcuccgccGCGCGCCgcggaaucuccacgaCGCaGCCa -3'
miRNA:   3'- -GGCCCG--CCGUu----------CGCGCGGa--------------GCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 12086 0.66 0.323921
Target:  5'- ----cCGGCAGGUGCGCCagcgucaggcCGCUGCUg -3'
miRNA:   3'- ggcccGCCGUUCGCGCGGa---------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 25358 0.66 0.316442
Target:  5'- gCCGGccgucGCGGUgagguagacGGGCGCGCCgacgacgaCGCccGCCg -3'
miRNA:   3'- -GGCC-----CGCCG---------UUCGCGCGGa-------GCGa-CGG- -5'
11519 3' -63.1 NC_003085.1 + 20819 0.66 0.315701
Target:  5'- gCCGGGCaGCAgccgguccuggagGGCguacuccaGCGCCugcuggaaggugUCGCUGUCc -3'
miRNA:   3'- -GGCCCGcCGU-------------UCG--------CGCGG------------AGCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 7308 0.67 0.294788
Target:  5'- cCCGGGCuguccguaggGGCAGcGCuGCGCCaUCcacaUGCCg -3'
miRNA:   3'- -GGCCCG----------CCGUU-CG-CGCGG-AGcg--ACGG- -5'
11519 3' -63.1 NC_003085.1 + 20929 0.67 0.274306
Target:  5'- gUGGGCGGCAccgcAGCgGCGagCUCgGC-GCCg -3'
miRNA:   3'- gGCCCGCCGU----UCG-CGCg-GAG-CGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 7429 0.67 0.294788
Target:  5'- aCUGGaGCGGCGcccaggGGCGCGuguagcccgcguCCUCaGCcGCCu -3'
miRNA:   3'- -GGCC-CGCCGU------UCGCGC------------GGAG-CGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 48968 0.66 0.309093
Target:  5'- gCGGcGCGGCuGGCGgGCCaaUGCU-CCg -3'
miRNA:   3'- gGCC-CGCCGuUCGCgCGGa-GCGAcGG- -5'
11519 3' -63.1 NC_003085.1 + 10081 0.66 0.339273
Target:  5'- cUCGGGCGGCAAugugucGUGUGagUCgGCguagGCCg -3'
miRNA:   3'- -GGCCCGCCGUU------CGCGCggAG-CGa---CGG- -5'
11519 3' -63.1 NC_003085.1 + 16547 0.67 0.287831
Target:  5'- aCGGGaaGGC-GGCGCGCaggUCGgacaCUGCCg -3'
miRNA:   3'- gGCCCg-CCGuUCGCGCGg--AGC----GACGG- -5'
11519 3' -63.1 NC_003085.1 + 3304 0.66 0.338493
Target:  5'- gUGGGcCGGCccagguAGCGCcggcaucGCCUUGCggcaucggGCCa -3'
miRNA:   3'- gGCCC-GCCGu-----UCGCG-------CGGAGCGa-------CGG- -5'
11519 3' -63.1 NC_003085.1 + 46738 0.66 0.309093
Target:  5'- uCCaGGCGGC-GGCgaaGCGCCUCGgcaucaCUGgCa -3'
miRNA:   3'- -GGcCCGCCGuUCG---CGCGGAGC------GACgG- -5'
11519 3' -63.1 NC_003085.1 + 38431 0.67 0.281004
Target:  5'- gCC-GGCGGCAuuCGUGCCcaggaaguugCGCgUGCCa -3'
miRNA:   3'- -GGcCCGCCGUucGCGCGGa---------GCG-ACGG- -5'
11519 3' -63.1 NC_003085.1 + 42104 0.67 0.274306
Target:  5'- cCCGGcUGGagagaAGGCGC-CCUCGUccgUGCCg -3'
miRNA:   3'- -GGCCcGCCg----UUCGCGcGGAGCG---ACGG- -5'
11519 3' -63.1 NC_003085.1 + 13898 0.66 0.331532
Target:  5'- cCUGGGCGGCGucuGCaCGUCaUgGC-GCCa -3'
miRNA:   3'- -GGCCCGCCGUu--CGcGCGG-AgCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 26911 0.66 0.323921
Target:  5'- -aGGGUGGCGGGgGCacacGCCUgGC-GCg -3'
miRNA:   3'- ggCCCGCCGUUCgCG----CGGAgCGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.