miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 3' -63.3 NC_003085.1 + 14051 0.69 0.202211
Target:  5'- cGACGGCGUGUCCGUCGaggccaUCUGcgaGCGc -3'
miRNA:   3'- -CUGCCGCGCGGGCGGC------AGACag-CGCc -5'
11520 3' -63.3 NC_003085.1 + 451 0.69 0.218001
Target:  5'- cACGGCGCggaggGCCaGCCGgcgCUGUUGCaGGu -3'
miRNA:   3'- cUGCCGCG-----CGGgCGGCa--GACAGCG-CC- -5'
11520 3' -63.3 NC_003085.1 + 12022 0.68 0.24068
Target:  5'- -cUGGCGCaCCUGCCGgugCUG-CGCGa -3'
miRNA:   3'- cuGCCGCGcGGGCGGCa--GACaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 30327 0.67 0.265295
Target:  5'- -cCaGCGgGCCCuGgCGgacgCUGUCGCGGg -3'
miRNA:   3'- cuGcCGCgCGGG-CgGCa---GACAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 27705 0.67 0.265295
Target:  5'- -cUGG-GCGUCCGcCCG-CUGUCGCGc -3'
miRNA:   3'- cuGCCgCGCGGGC-GGCaGACAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 20466 0.67 0.29191
Target:  5'- --gGGCGUGUCCGCgaaGUCUGUgggcUGCGa -3'
miRNA:   3'- cugCCGCGCGGGCGg--CAGACA----GCGCc -5'
11520 3' -63.3 NC_003085.1 + 2153 0.67 0.285066
Target:  5'- cGGCGGCuGCGCUCGUcgCGUCaccGUC-CGGg -3'
miRNA:   3'- -CUGCCG-CGCGGGCG--GCAGa--CAGcGCC- -5'
11520 3' -63.3 NC_003085.1 + 46890 0.67 0.282364
Target:  5'- cGGCGGCGaggugaugcCGCCCaaggacguggccaCCGUCaucGUCGCGGa -3'
miRNA:   3'- -CUGCCGC---------GCGGGc------------GGCAGa--CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 38160 0.67 0.271759
Target:  5'- uGGCGGCGCcggacaccuGCgCUGCCGUCUc-CGCGa -3'
miRNA:   3'- -CUGCCGCG---------CG-GGCGGCAGAcaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 23728 0.67 0.265295
Target:  5'- gGGCGGCGUucGCCUGCgCGgcCUGcUCGCGc -3'
miRNA:   3'- -CUGCCGCG--CGGGCG-GCa-GAC-AGCGCc -5'
11520 3' -63.3 NC_003085.1 + 30864 0.67 0.265295
Target:  5'- uGCGGCGCGCUCacgGCUcuuccgGUCgagGUCGCGc -3'
miRNA:   3'- cUGCCGCGCGGG---CGG------CAGa--CAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 19909 0.67 0.29191
Target:  5'- cGACaGCG-GUUCGCCG-UUGUUGCGGu -3'
miRNA:   3'- -CUGcCGCgCGGGCGGCaGACAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 40985 0.66 0.305266
Target:  5'- cGCGGCGaGCUCGUCacggcagGUCUugagGUCGCGGc -3'
miRNA:   3'- cUGCCGCgCGGGCGG-------CAGA----CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 48456 0.66 0.305982
Target:  5'- uGCGGCGCuGCUCGCCGcgcUCaGgagCGCGc -3'
miRNA:   3'- cUGCCGCG-CGGGCGGC---AGaCa--GCGCc -5'
11520 3' -63.3 NC_003085.1 + 29270 0.66 0.313211
Target:  5'- aGGCGcGUGCGCuCCG-CGUCc-UCGCGGc -3'
miRNA:   3'- -CUGC-CGCGCG-GGCgGCAGacAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 32298 0.66 0.313211
Target:  5'- cGCGGCGC-CCCGUgcUCUGg-GCGGu -3'
miRNA:   3'- cUGCCGCGcGGGCGgcAGACagCGCC- -5'
11520 3' -63.3 NC_003085.1 + 16541 0.66 0.313211
Target:  5'- aGGCGGCGCGCaggucggacaCUGCCGUCgccucgaaUGaCGuCGGc -3'
miRNA:   3'- -CUGCCGCGCG----------GGCGGCAG--------ACaGC-GCC- -5'
11520 3' -63.3 NC_003085.1 + 33014 0.66 0.343412
Target:  5'- uGGCaGGCGCGCCUGuuGagccgGUCGCc- -3'
miRNA:   3'- -CUG-CCGCGCGGGCggCaga--CAGCGcc -5'
11520 3' -63.3 NC_003085.1 + 39727 0.66 0.351282
Target:  5'- cACGcGCGCGCCgcuCGgUGUC-GUCGCGa -3'
miRNA:   3'- cUGC-CGCGCGG---GCgGCAGaCAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 36096 0.79 0.036138
Target:  5'- uACGGCGUGCCCaugGCCGccauccgccaagCUGUCGCGGa -3'
miRNA:   3'- cUGCCGCGCGGG---CGGCa-----------GACAGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.