Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 3' | -63.3 | NC_003085.1 | + | 7492 | 0.66 | 0.320568 |
Target: 5'- uGACGG-GCGUCCG-CGUCgagcgGUUGCaGGa -3' miRNA: 3'- -CUGCCgCGCGGGCgGCAGa----CAGCG-CC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 19993 | 0.67 | 0.271759 |
Target: 5'- uACGGCcCuG-CCGCCGUC-GUCGUGGg -3' miRNA: 3'- cUGCCGcG-CgGGCGGCAGaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 3485 | 0.67 | 0.271759 |
Target: 5'- cGACGucuGCGUcgacuacaaGCUCGCCGUCUGgcgucUCGCGa -3' miRNA: 3'- -CUGC---CGCG---------CGGGCGGCAGAC-----AGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 15196 | 0.67 | 0.271759 |
Target: 5'- -cCGGUGCGCCagCGCCG-Cgc-CGCGGa -3' miRNA: 3'- cuGCCGCGCGG--GCGGCaGacaGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 5369 | 0.67 | 0.278349 |
Target: 5'- -uCGGCGCGUCCGgucCCGUCaccGUCGaGGc -3' miRNA: 3'- cuGCCGCGCGGGC---GGCAGa--CAGCgCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 7759 | 0.67 | 0.278349 |
Target: 5'- gGACGGcCGUGUCaucaGCCaUC-GUCGCGGc -3' miRNA: 3'- -CUGCC-GCGCGGg---CGGcAGaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 27675 | 0.67 | 0.285066 |
Target: 5'- uACGGCgGCGaCgUGCUGgugCUGUCGCGu -3' miRNA: 3'- cUGCCG-CGC-GgGCGGCa--GACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 13931 | 0.66 | 0.310304 |
Target: 5'- gGACGGgGCGCgCGCCGaagaagaaGCGGa -3' miRNA: 3'- -CUGCCgCGCGgGCGGCagacag--CGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 621 | 0.66 | 0.320568 |
Target: 5'- --gGGCGCGCUCGagG-CUGgCGCGGa -3' miRNA: 3'- cugCCGCGCGGGCggCaGACaGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 40352 | 0.67 | 0.265295 |
Target: 5'- gGGCGGUGgGCaaGCCGcugCUGccCGCGGc -3' miRNA: 3'- -CUGCCGCgCGggCGGCa--GACa-GCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 27705 | 0.67 | 0.265295 |
Target: 5'- -cUGG-GCGUCCGcCCG-CUGUCGCGc -3' miRNA: 3'- cuGCCgCGCGGGC-GGCaGACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 30327 | 0.67 | 0.265295 |
Target: 5'- -cCaGCGgGCCCuGgCGgacgCUGUCGCGGg -3' miRNA: 3'- cuGcCGCgCGGG-CgGCa---GACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25380 | 0.74 | 0.089779 |
Target: 5'- cGACGGCGgGCuucaCCGUCGUCcagaUGUCGCGu -3' miRNA: 3'- -CUGCCGCgCG----GGCGGCAG----ACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 12294 | 0.74 | 0.09223 |
Target: 5'- cGACGGCGCggugGUCCGCUGg--GUUGCGGc -3' miRNA: 3'- -CUGCCGCG----CGGGCGGCagaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 5707 | 0.72 | 0.130404 |
Target: 5'- cGAUGGCGgGaCUCgGCCGUCUacUCGCGGg -3' miRNA: 3'- -CUGCCGCgC-GGG-CGGCAGAc-AGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 26728 | 0.7 | 0.173599 |
Target: 5'- uGACGGCGCGgC-GCCGgugCUGUCacucaaccgGCGGc -3' miRNA: 3'- -CUGCCGCGCgGgCGGCa--GACAG---------CGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 32952 | 0.7 | 0.182712 |
Target: 5'- --aGGCGCGCCUGCCa--UGcUUGCGGc -3' miRNA: 3'- cugCCGCGCGGGCGGcagAC-AGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 14051 | 0.69 | 0.202211 |
Target: 5'- cGACGGCGUGUCCGUCGaggccaUCUGcgaGCGc -3' miRNA: 3'- -CUGCCGCGCGGGCGGC------AGACag-CGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 451 | 0.69 | 0.218001 |
Target: 5'- cACGGCGCggaggGCCaGCCGgcgCUGUUGCaGGu -3' miRNA: 3'- cUGCCGCG-----CGGgCGGCa--GACAGCG-CC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 12022 | 0.68 | 0.24068 |
Target: 5'- -cUGGCGCaCCUGCCGgugCUG-CGCGa -3' miRNA: 3'- cuGCCGCGcGGGCGGCa--GACaGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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