Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 3' | -63.3 | NC_003085.1 | + | 3873 | 1.09 | 0.000188 |
Target: 5'- cGACGGCGCGCCCGCCGUCUGUCGCGGu -3' miRNA: 3'- -CUGCCGCGCGGGCGGCAGACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 36096 | 0.79 | 0.036138 |
Target: 5'- uACGGCGUGCCCaugGCCGccauccgccaagCUGUCGCGGa -3' miRNA: 3'- cUGCCGCGCGGG---CGGCa-----------GACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 3940 | 0.75 | 0.076325 |
Target: 5'- aGACGGCGgGCgCGCCGUCgacgcGcCGUGGu -3' miRNA: 3'- -CUGCCGCgCGgGCGGCAGa----CaGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25380 | 0.74 | 0.089779 |
Target: 5'- cGACGGCGgGCuucaCCGUCGUCcagaUGUCGCGu -3' miRNA: 3'- -CUGCCGCgCG----GGCGGCAG----ACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 12294 | 0.74 | 0.09223 |
Target: 5'- cGACGGCGCggugGUCCGCUGg--GUUGCGGc -3' miRNA: 3'- -CUGCCGCG----CGGGCGGCagaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25449 | 0.72 | 0.1237 |
Target: 5'- cGACGGUGaaGCCCGCCGUCgg-CGUGc -3' miRNA: 3'- -CUGCCGCg-CGGGCGGCAGacaGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25704 | 0.72 | 0.129718 |
Target: 5'- aGACGGgGCGCCCggccuucGUCGUCUccuccucGUCGCGc -3' miRNA: 3'- -CUGCCgCGCGGG-------CGGCAGA-------CAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 5707 | 0.72 | 0.130404 |
Target: 5'- cGAUGGCGgGaCUCgGCCGUCUacUCGCGGg -3' miRNA: 3'- -CUGCCGCgC-GGG-CGGCAGAc-AGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 26728 | 0.7 | 0.173599 |
Target: 5'- uGACGGCGCGgC-GCCGgugCUGUCacucaaccgGCGGc -3' miRNA: 3'- -CUGCCGCGCgGgCGGCa--GACAG---------CGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 47022 | 0.7 | 0.178103 |
Target: 5'- gGACGGUGUGCCCGCguCGgcccCUG-CGCGc -3' miRNA: 3'- -CUGCCGCGCGGGCG--GCa---GACaGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 1041 | 0.7 | 0.182246 |
Target: 5'- cGGCGGCGUGuCCUGCCccggcagcggccuGUCUGgcacccggaCGCGGc -3' miRNA: 3'- -CUGCCGCGC-GGGCGG-------------CAGACa--------GCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25376 | 0.7 | 0.182712 |
Target: 5'- cACGGCGuCGUCCaccugGCCGgCcGUCGCGGu -3' miRNA: 3'- cUGCCGC-GCGGG-----CGGCaGaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 32952 | 0.7 | 0.182712 |
Target: 5'- --aGGCGCGCCUGCCa--UGcUUGCGGc -3' miRNA: 3'- cugCCGCGCGGGCGGcagAC-AGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 14051 | 0.69 | 0.202211 |
Target: 5'- cGACGGCGUGUCCGUCGaggccaUCUGcgaGCGc -3' miRNA: 3'- -CUGCCGCGCGGGCGGC------AGACag-CGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 451 | 0.69 | 0.218001 |
Target: 5'- cACGGCGCggaggGCCaGCCGgcgCUGUUGCaGGu -3' miRNA: 3'- cUGCCGCG-----CGGgCGGCa--GACAGCG-CC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 43669 | 0.68 | 0.229104 |
Target: 5'- gGAUGGCaGCGCCUGCgaccUCUGcCGUGGc -3' miRNA: 3'- -CUGCCG-CGCGGGCGgc--AGACaGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 12022 | 0.68 | 0.24068 |
Target: 5'- -cUGGCGCaCCUGCCGgugCUG-CGCGa -3' miRNA: 3'- cuGCCGCGcGGGCGGCa--GACaGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25636 | 0.68 | 0.24665 |
Target: 5'- aGGCGGUccGCGCCCGCCugcuUCUGccCGCu- -3' miRNA: 3'- -CUGCCG--CGCGGGCGGc---AGACa-GCGcc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 17079 | 0.68 | 0.252741 |
Target: 5'- aGCGcccaucCGCGCUucucguCGCCGUCggcGUCGCGGg -3' miRNA: 3'- cUGCc-----GCGCGG------GCGGCAGa--CAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 30327 | 0.67 | 0.265295 |
Target: 5'- -cCaGCGgGCCCuGgCGgacgCUGUCGCGGg -3' miRNA: 3'- cuGcCGCgCGGG-CgGCa---GACAGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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