miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 14014 0.68 0.38769
Target:  5'- cGACGCUccgcuucuucuucgGCgCGCGCCCCGUccgaaacGCg--CGCa -3'
miRNA:   3'- -CUGCGG--------------UG-GCGCGGGGUA-------CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 19024 0.68 0.390365
Target:  5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 8600 0.68 0.400278
Target:  5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3'
miRNA:   3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 34780 0.68 0.409428
Target:  5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3'
miRNA:   3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 45849 0.68 0.380614
Target:  5'- cGGCGCggcgaguccugaCGCCGCGUCCgGUGCUgguggugacgaCGCa -3'
miRNA:   3'- -CUGCG------------GUGGCGCGGGgUACGAaa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 9192 0.68 0.39126
Target:  5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3'
miRNA:   3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 27027 0.68 0.39126
Target:  5'- -gUGCCugCGCGCUCgAcGCUgccaUUCGCc -3'
miRNA:   3'- cuGCGGugGCGCGGGgUaCGA----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 42522 0.68 0.39126
Target:  5'- cACGCCACCuGCgugGCCUCccGCU-UCGCc -3'
miRNA:   3'- cUGCGGUGG-CG---CGGGGuaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 38006 0.68 0.39126
Target:  5'- gGACGCucaCACCGCgucgGCCCCAacgGCgacCGCu -3'
miRNA:   3'- -CUGCG---GUGGCG----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 23234 0.68 0.39126
Target:  5'- aGACgGCCGCCGCGCUUCGcaccGCgccgcccgCGCa -3'
miRNA:   3'- -CUG-CGGUGGCGCGGGGUa---CGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 30255 0.68 0.409427
Target:  5'- cGGCGCCcagcccCCGcCGCCCCAgGCggaCGUg -3'
miRNA:   3'- -CUGCGGu-----GGC-GCGGGGUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 16202 0.69 0.348204
Target:  5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3'
miRNA:   3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 7350 0.69 0.348204
Target:  5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3'
miRNA:   3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30788 0.69 0.348204
Target:  5'- gGACGCCGguCCGCuucCCCCuUGCgccgcUUCGCc -3'
miRNA:   3'- -CUGCGGU--GGCGc--GGGGuACGa----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 41064 0.69 0.348204
Target:  5'- cGACGCCGCUGggccaGCCCUugccGCUUgcgagCGCu -3'
miRNA:   3'- -CUGCGGUGGCg----CGGGGua--CGAAa----GCG- -5'
11521 5' -58.4 NC_003085.1 + 34162 0.69 0.340009
Target:  5'- uGACGCCACCGaaccCGCCUCAUcgGCgg-CGg -3'
miRNA:   3'- -CUGCGGUGGC----GCGGGGUA--CGaaaGCg -5'
11521 5' -58.4 NC_003085.1 + 24554 0.69 0.339197
Target:  5'- gGugGCCACCGcCGCCauguccuCCAccUGCgagCGCc -3'
miRNA:   3'- -CugCGGUGGC-GCGG-------GGU--ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 15282 0.69 0.365013
Target:  5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3'
miRNA:   3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5'
11521 5' -58.4 NC_003085.1 + 34643 0.7 0.307883
Target:  5'- cGugGCCAUgGCGUCCCcuugauaAUGCUUgucauacaagCGCu -3'
miRNA:   3'- -CugCGGUGgCGCGGGG-------UACGAAa---------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.