miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 40790 0.66 0.528342
Target:  5'- gGACGgCACCccgGCGCCCaagGCcacgCGCg -3'
miRNA:   3'- -CUGCgGUGG---CGCGGGguaCGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 5635 0.66 0.487021
Target:  5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3'
miRNA:   3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 18939 0.67 0.436683
Target:  5'- aGCGCCAUCGCcuacaggGCCCCGcgacgGUgg-CGCg -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUa----CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 17598 0.67 0.437641
Target:  5'- cACGCCuGCUGCuCCgCCGUGCcuuccgUCGCg -3'
miRNA:   3'- cUGCGG-UGGCGcGG-GGUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 43533 0.67 0.437641
Target:  5'- cGGCGCCgaagGCgGCGCgUCCA-GCUUgCGCg -3'
miRNA:   3'- -CUGCGG----UGgCGCG-GGGUaCGAAaGCG- -5'
11521 5' -58.4 NC_003085.1 + 27654 0.67 0.451184
Target:  5'- gGACGCCGCauCGCCaCCgacuacggcggcgacGUGCUggugcugUCGCg -3'
miRNA:   3'- -CUGCGGUGgcGCGG-GG---------------UACGAa------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 2371 0.67 0.428112
Target:  5'- cGAgGCCGCgGCGCgCgA-GCUcUCGCa -3'
miRNA:   3'- -CUgCGGUGgCGCGgGgUaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 16259 0.67 0.428112
Target:  5'- uGCGCCGCCGC-CUCCAggacgcccGCUacuggCGCg -3'
miRNA:   3'- cUGCGGUGGCGcGGGGUa-------CGAaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 26791 0.67 0.466938
Target:  5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3'
miRNA:   3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 17919 0.67 0.447291
Target:  5'- cGGCGCCugCGggcaccagcacUGCCCCAgggGCcugcCGCa -3'
miRNA:   3'- -CUGCGGugGC-----------GCGGGGUa--CGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 23336 0.67 0.447291
Target:  5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3'
miRNA:   3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 2434 0.67 0.447291
Target:  5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3'
miRNA:   3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 26148 0.67 0.441487
Target:  5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 103 0.67 0.428112
Target:  5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3'
miRNA:   3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 38834 0.67 0.437641
Target:  5'- gGGCGCacuGCCGCGUcguCCCAcUGCgacggCGCg -3'
miRNA:   3'- -CUGCGg--UGGCGCG---GGGU-ACGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 38006 0.68 0.39126
Target:  5'- gGACGCucaCACCGCgucgGCCCCAacgGCgacCGCu -3'
miRNA:   3'- -CUGCG---GUGGCG----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30255 0.68 0.409427
Target:  5'- cGGCGCCcagcccCCGcCGCCCCAgGCggaCGUg -3'
miRNA:   3'- -CUGCGGu-----GGC-GCGGGGUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 42522 0.68 0.39126
Target:  5'- cACGCCACCuGCgugGCCUCccGCU-UCGCc -3'
miRNA:   3'- cUGCGGUGG-CG---CGGGGuaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 27027 0.68 0.39126
Target:  5'- -gUGCCugCGCGCUCgAcGCUgccaUUCGCc -3'
miRNA:   3'- cuGCGGugGCGCGGGgUaCGA----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 9192 0.68 0.39126
Target:  5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3'
miRNA:   3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.