miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 11779 0.75 0.136986
Target:  5'- cGGCGgCGCCGCGCUCCggGCgugUCGg -3'
miRNA:   3'- -CUGCgGUGGCGCGGGGuaCGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 12157 0.66 0.476927
Target:  5'- cGCGUCACC-CGCCCCGUaGaCgagaaUCGCc -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA-C-Gaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 12362 0.72 0.226149
Target:  5'- aGCGgaCCACCGCGCCgucgcgugcgaguuCCAUGCaccggUCGCg -3'
miRNA:   3'- cUGC--GGUGGCGCGG--------------GGUACGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 12419 0.74 0.157049
Target:  5'- cGGgGCCGCUGCGCUCCGaggagGCUgugUCGUg -3'
miRNA:   3'- -CUgCGGUGGCGCGGGGUa----CGAa--AGCG- -5'
11521 5' -58.4 NC_003085.1 + 14014 0.68 0.38769
Target:  5'- cGACGCUccgcuucuucuucgGCgCGCGCCCCGUccgaaacGCg--CGCa -3'
miRNA:   3'- -CUGCGG--------------UG-GCGCGGGGUA-------CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 14307 0.7 0.308639
Target:  5'- aGGgGCUguaACCGgGCCCC-UGCUUcCGCu -3'
miRNA:   3'- -CUgCGG---UGGCgCGGGGuACGAAaGCG- -5'
11521 5' -58.4 NC_003085.1 + 14746 0.8 0.061716
Target:  5'- aGCGCCACgGCGCCuCCAaguccuugccgcgcUGCUUUCGUc -3'
miRNA:   3'- cUGCGGUGgCGCGG-GGU--------------ACGAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 15187 0.66 0.528343
Target:  5'- cGCGgCGCgGCGCUCCAUccGCUcgUCGa -3'
miRNA:   3'- cUGCgGUGgCGCGGGGUA--CGAa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 15282 0.69 0.365013
Target:  5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3'
miRNA:   3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5'
11521 5' -58.4 NC_003085.1 + 15368 0.66 0.497215
Target:  5'- cGACGCC-CCGgGCCagCAUGaCgcgggCGCg -3'
miRNA:   3'- -CUGCGGuGGCgCGGg-GUAC-Gaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 16202 0.69 0.348204
Target:  5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3'
miRNA:   3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 16259 0.67 0.428112
Target:  5'- uGCGCCGCCGC-CUCCAggacgcccGCUacuggCGCg -3'
miRNA:   3'- cUGCGGUGGCGcGGGGUa-------CGAaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 17598 0.67 0.437641
Target:  5'- cACGCCuGCUGCuCCgCCGUGCcuuccgUCGCg -3'
miRNA:   3'- cUGCGG-UGGCGcGG-GGUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 17919 0.67 0.447291
Target:  5'- cGGCGCCugCGggcaccagcacUGCCCCAgggGCcugcCGCa -3'
miRNA:   3'- -CUGCGGugGC-----------GCGGGGUa--CGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 18642 0.71 0.265808
Target:  5'- aGCGUuuCGCCGUGCCCCcgcgcaucuGUGCgagCGCa -3'
miRNA:   3'- cUGCG--GUGGCGCGGGG---------UACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 18939 0.67 0.436683
Target:  5'- aGCGCCAUCGCcuacaggGCCCCGcgacgGUgg-CGCg -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUa----CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 19024 0.68 0.390365
Target:  5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3'
miRNA:   3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 19766 0.71 0.265808
Target:  5'- aGAUGCCGCCGCGCgCCuccaggGCcgccaggaggUCGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGgGGua----CGaa--------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 20240 0.66 0.528342
Target:  5'- -uCGCCACCuuCGCCCaggugGCgcagUCGCu -3'
miRNA:   3'- cuGCGGUGGc-GCGGGgua--CGaa--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.