miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 103 0.67 0.428112
Target:  5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3'
miRNA:   3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 620 0.66 0.476927
Target:  5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3'
miRNA:   3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 984 0.66 0.517881
Target:  5'- cACGCCGCCGUGUCCaaggGCUa---- -3'
miRNA:   3'- cUGCGGUGGCGCGGGgua-CGAaagcg -5'
11521 5' -58.4 NC_003085.1 + 1000 0.72 0.227919
Target:  5'- gGACGCgGCCGaCGCUCCAggacucGCUcUUCGUg -3'
miRNA:   3'- -CUGCGgUGGC-GCGGGGUa-----CGA-AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 1393 0.71 0.259156
Target:  5'- aGCGCCAUCGCaGUgCCA-GCcUUCGCg -3'
miRNA:   3'- cUGCGGUGGCG-CGgGGUaCGaAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 2371 0.67 0.428112
Target:  5'- cGAgGCCGCgGCGCgCgA-GCUcUCGCa -3'
miRNA:   3'- -CUgCGGUGgCGCGgGgUaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 2434 0.67 0.447291
Target:  5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3'
miRNA:   3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 2717 0.68 0.382375
Target:  5'- uGACGCCACCaCGgCCCAaGCggguaGCu -3'
miRNA:   3'- -CUGCGGUGGcGCgGGGUaCGaaag-CG- -5'
11521 5' -58.4 NC_003085.1 + 4042 1.11 0.000293
Target:  5'- cGACGCCACCGCGCCCCAUGCUUUCGCu -3'
miRNA:   3'- -CUGCGGUGGCGCGGGGUACGAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 4787 0.66 0.517881
Target:  5'- --aGCCugCGUccaGCCCCAcUGCgugUGCa -3'
miRNA:   3'- cugCGGugGCG---CGGGGU-ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 5252 0.7 0.293074
Target:  5'- cGGCGCCGCCcugccuuccGCGCCaggauggCCGcUGCcUUCGCg -3'
miRNA:   3'- -CUGCGGUGG---------CGCGG-------GGU-ACGaAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 5635 0.66 0.487021
Target:  5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3'
miRNA:   3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 7350 0.69 0.348204
Target:  5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3'
miRNA:   3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 8600 0.68 0.400278
Target:  5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3'
miRNA:   3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 8880 0.71 0.240014
Target:  5'- cACGUCACCGCGUCUggCAUGCgcacCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG--GUACGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 8917 0.7 0.308639
Target:  5'- cACGUCAUgGcCGCCCCuccUGCUcgCGCa -3'
miRNA:   3'- cUGCGGUGgC-GCGGGGu--ACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 9192 0.68 0.39126
Target:  5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3'
miRNA:   3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 10461 0.66 0.501319
Target:  5'- cGGCGCUuUgGCGCCCCucgGCUggccgaccugcugCGCg -3'
miRNA:   3'- -CUGCGGuGgCGCGGGGua-CGAaa-----------GCG- -5'
11521 5' -58.4 NC_003085.1 + 10614 0.68 0.373626
Target:  5'- -cCGCCACuCGCGCUCCA-GCacUUCGa -3'
miRNA:   3'- cuGCGGUG-GCGCGGGGUaCGa-AAGCg -5'
11521 5' -58.4 NC_003085.1 + 11664 0.71 0.272598
Target:  5'- cGCGCCGCCcUGCCCCGUuccaGCcaggCGCg -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA----CGaaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.