miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 48904 0.71 0.265808
Target:  5'- -cCGCCAgCCGCGCCgCCucGCgccgUUCGCc -3'
miRNA:   3'- cuGCGGU-GGCGCGG-GGuaCGa---AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48762 0.68 0.382375
Target:  5'- -cCGCCacGCCGCGCaacggugcgCCCAUGUUcgUCGUc -3'
miRNA:   3'- cuGCGG--UGGCGCG---------GGGUACGAa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 48758 0.71 0.258498
Target:  5'- aGGCGCCACgCGgaguUGCCCCGUggcgacuggcggcGCUucUUCGCg -3'
miRNA:   3'- -CUGCGGUG-GC----GCGGGGUA-------------CGA--AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48680 0.66 0.497215
Target:  5'- cGGCGCCAagcgcaucgcUCGCGCCuuCCcgGCggUgGCg -3'
miRNA:   3'- -CUGCGGU----------GGCGCGG--GGuaCGaaAgCG- -5'
11521 5' -58.4 NC_003085.1 + 48454 0.66 0.487021
Target:  5'- cGGCGCUgcucGCCGCGCUCaggaGCg--CGCg -3'
miRNA:   3'- -CUGCGG----UGGCGCGGGgua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 47799 0.7 0.293801
Target:  5'- uACGCgCACCGCGCCCguCA-GCaggCGCa -3'
miRNA:   3'- cUGCG-GUGGCGCGGG--GUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 47491 0.76 0.126105
Target:  5'- uGGCGCUGCCGCGUUCCGUGUc--CGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGGGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 47336 0.66 0.476927
Target:  5'- cGCGCCGCCcuUGCCcauCCAUGCg--UGCg -3'
miRNA:   3'- cUGCGGUGGc-GCGG---GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 45849 0.68 0.380614
Target:  5'- cGGCGCggcgaguccugaCGCCGCGUCCgGUGCUgguggugacgaCGCa -3'
miRNA:   3'- -CUGCG------------GUGGCGCGGGgUACGAaa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 44989 0.71 0.244372
Target:  5'- -uCGUCACCGUGCCCUcgucgucgcggaugGUGaUUUCGCg -3'
miRNA:   3'- cuGCGGUGGCGCGGGG--------------UACgAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 43533 0.67 0.437641
Target:  5'- cGGCGCCgaagGCgGCGCgUCCA-GCUUgCGCg -3'
miRNA:   3'- -CUGCGG----UGgCGCG-GGGUaCGAAaGCG- -5'
11521 5' -58.4 NC_003085.1 + 43114 0.66 0.475923
Target:  5'- cACGCCgggaacaGCCuuggcguagaGCGCgCCCAUGCUg-CGCg -3'
miRNA:   3'- cUGCGG-------UGG----------CGCG-GGGUACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 42895 0.68 0.373626
Target:  5'- cGCGCCGCCaGCGCcggaCCCGUGCa----- -3'
miRNA:   3'- cUGCGGUGG-CGCG----GGGUACGaaagcg -5'
11521 5' -58.4 NC_003085.1 + 42818 0.68 0.382375
Target:  5'- gGAUGCCguccACCGCGCCCgCAUcGCcccgaCGCc -3'
miRNA:   3'- -CUGCGG----UGGCGCGGG-GUA-CGaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 42522 0.68 0.39126
Target:  5'- cACGCCACCuGCgugGCCUCccGCU-UCGCc -3'
miRNA:   3'- cUGCGGUGG-CG---CGGGGuaCGAaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 42224 0.66 0.528342
Target:  5'- uGAUGCCACuCaCGUCCCAcgggacgGCUcgCGCu -3'
miRNA:   3'- -CUGCGGUG-GcGCGGGGUa------CGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 41824 0.8 0.06406
Target:  5'- cGGCGCCGCCcaaGCGCCCCAUGaguccCGCc -3'
miRNA:   3'- -CUGCGGUGG---CGCGGGGUACgaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 41543 0.7 0.279526
Target:  5'- uGGCGCgGuacuucacCCGCGCCCCAgccuUGCg--CGCc -3'
miRNA:   3'- -CUGCGgU--------GGCGCGGGGU----ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 41064 0.69 0.348204
Target:  5'- cGACGCCGCUGggccaGCCCUugccGCUUgcgagCGCu -3'
miRNA:   3'- -CUGCGGUGGCg----CGGGGua--CGAAa----GCG- -5'
11521 5' -58.4 NC_003085.1 + 40790 0.66 0.528342
Target:  5'- gGACGgCACCccgGCGCCCaagGCcacgCGCg -3'
miRNA:   3'- -CUGCgGUGG---CGCGGGguaCGaaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.