Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 23234 | 0.68 | 0.39126 |
Target: 5'- aGACgGCCGCCGCGCUUCGcaccGCgccgcccgCGCa -3' miRNA: 3'- -CUG-CGGUGGCGCGGGGUa---CGaaa-----GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48758 | 0.71 | 0.258498 |
Target: 5'- aGGCGCCACgCGgaguUGCCCCGUggcgacuggcggcGCUucUUCGCg -3' miRNA: 3'- -CUGCGGUG-GC----GCGGGGUA-------------CGA--AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 30126 | 0.71 | 0.259155 |
Target: 5'- gGACGCCAuCCGCcgccgGCCCCAgcaGCccaCGCa -3' miRNA: 3'- -CUGCGGU-GGCG-----CGGGGUa--CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 18642 | 0.71 | 0.265808 |
Target: 5'- aGCGUuuCGCCGUGCCCCcgcgcaucuGUGCgagCGCa -3' miRNA: 3'- cUGCG--GUGGCGCGGGG---------UACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48904 | 0.71 | 0.265808 |
Target: 5'- -cCGCCAgCCGCGCCgCCucGCgccgUUCGCc -3' miRNA: 3'- cuGCGGU-GGCGCGG-GGuaCGa---AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 34643 | 0.7 | 0.307883 |
Target: 5'- cGugGCCAUgGCGUCCCcuugauaAUGCUUgucauacaagCGCu -3' miRNA: 3'- -CugCGGUGgCGCGGGG-------UACGAAa---------GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 7350 | 0.69 | 0.348204 |
Target: 5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3' miRNA: 3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 16202 | 0.69 | 0.348204 |
Target: 5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3' miRNA: 3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15282 | 0.69 | 0.365013 |
Target: 5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3' miRNA: 3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 37238 | 0.71 | 0.25264 |
Target: 5'- --aGCCGCCGCGCUCaagGCaggcgUCGCa -3' miRNA: 3'- cugCGGUGGCGCGGGguaCGaa---AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 25237 | 0.71 | 0.24626 |
Target: 5'- cGGCGCCGCCcugguGCGCUCCGcgGCgggcgUCGUc -3' miRNA: 3'- -CUGCGGUGG-----CGCGGGGUa-CGaa---AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 44989 | 0.71 | 0.244372 |
Target: 5'- -uCGUCACCGUGCCCUcgucgucgcggaugGUGaUUUCGCg -3' miRNA: 3'- cuGCGGUGGCGCGGGG--------------UACgAAAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 41824 | 0.8 | 0.06406 |
Target: 5'- cGGCGCCGCCcaaGCGCCCCAUGaguccCGCc -3' miRNA: 3'- -CUGCGGUGG---CGCGGGGUACgaaa-GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 47491 | 0.76 | 0.126105 |
Target: 5'- uGGCGCUGCCGCGUUCCGUGUc--CGCc -3' miRNA: 3'- -CUGCGGUGGCGCGGGGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 11779 | 0.75 | 0.136986 |
Target: 5'- cGGCGgCGCCGCGCUCCggGCgugUCGg -3' miRNA: 3'- -CUGCgGUGGCGCGGGGuaCGaa-AGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 12419 | 0.74 | 0.157049 |
Target: 5'- cGGgGCCGCUGCGCUCCGaggagGCUgugUCGUg -3' miRNA: 3'- -CUgCGGUGGCGCGGGGUa----CGAa--AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 34552 | 0.73 | 0.179733 |
Target: 5'- aGCGCCACCaGCcgGCCCgCGUGCgc-CGCa -3' miRNA: 3'- cUGCGGUGG-CG--CGGG-GUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 29750 | 0.73 | 0.189593 |
Target: 5'- cGugGCCGCCgucGCGCCCCAccucGUg--CGCa -3' miRNA: 3'- -CugCGGUGG---CGCGGGGUa---CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 28472 | 0.72 | 0.216343 |
Target: 5'- aGGCGCuCACCG-GCUgCGUGCUgaCGCg -3' miRNA: 3'- -CUGCG-GUGGCgCGGgGUACGAaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 8880 | 0.71 | 0.240014 |
Target: 5'- cACGUCACCGCGUCUggCAUGCgcacCGCc -3' miRNA: 3'- cUGCGGUGGCGCGGG--GUACGaaa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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