miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 23234 0.68 0.39126
Target:  5'- aGACgGCCGCCGCGCUUCGcaccGCgccgcccgCGCa -3'
miRNA:   3'- -CUG-CGGUGGCGCGGGGUa---CGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 48758 0.71 0.258498
Target:  5'- aGGCGCCACgCGgaguUGCCCCGUggcgacuggcggcGCUucUUCGCg -3'
miRNA:   3'- -CUGCGGUG-GC----GCGGGGUA-------------CGA--AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 30126 0.71 0.259155
Target:  5'- gGACGCCAuCCGCcgccgGCCCCAgcaGCccaCGCa -3'
miRNA:   3'- -CUGCGGU-GGCG-----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 18642 0.71 0.265808
Target:  5'- aGCGUuuCGCCGUGCCCCcgcgcaucuGUGCgagCGCa -3'
miRNA:   3'- cUGCG--GUGGCGCGGGG---------UACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 48904 0.71 0.265808
Target:  5'- -cCGCCAgCCGCGCCgCCucGCgccgUUCGCc -3'
miRNA:   3'- cuGCGGU-GGCGCGG-GGuaCGa---AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 34643 0.7 0.307883
Target:  5'- cGugGCCAUgGCGUCCCcuugauaAUGCUUgucauacaagCGCu -3'
miRNA:   3'- -CugCGGUGgCGCGGGG-------UACGAAa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 7350 0.69 0.348204
Target:  5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3'
miRNA:   3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 16202 0.69 0.348204
Target:  5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3'
miRNA:   3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 15282 0.69 0.365013
Target:  5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3'
miRNA:   3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5'
11521 5' -58.4 NC_003085.1 + 37238 0.71 0.25264
Target:  5'- --aGCCGCCGCGCUCaagGCaggcgUCGCa -3'
miRNA:   3'- cugCGGUGGCGCGGGguaCGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 25237 0.71 0.24626
Target:  5'- cGGCGCCGCCcugguGCGCUCCGcgGCgggcgUCGUc -3'
miRNA:   3'- -CUGCGGUGG-----CGCGGGGUa-CGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 44989 0.71 0.244372
Target:  5'- -uCGUCACCGUGCCCUcgucgucgcggaugGUGaUUUCGCg -3'
miRNA:   3'- cuGCGGUGGCGCGGGG--------------UACgAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 41824 0.8 0.06406
Target:  5'- cGGCGCCGCCcaaGCGCCCCAUGaguccCGCc -3'
miRNA:   3'- -CUGCGGUGG---CGCGGGGUACgaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 47491 0.76 0.126105
Target:  5'- uGGCGCUGCCGCGUUCCGUGUc--CGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGGGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 11779 0.75 0.136986
Target:  5'- cGGCGgCGCCGCGCUCCggGCgugUCGg -3'
miRNA:   3'- -CUGCgGUGGCGCGGGGuaCGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 12419 0.74 0.157049
Target:  5'- cGGgGCCGCUGCGCUCCGaggagGCUgugUCGUg -3'
miRNA:   3'- -CUgCGGUGGCGCGGGGUa----CGAa--AGCG- -5'
11521 5' -58.4 NC_003085.1 + 34552 0.73 0.179733
Target:  5'- aGCGCCACCaGCcgGCCCgCGUGCgc-CGCa -3'
miRNA:   3'- cUGCGGUGG-CG--CGGG-GUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 29750 0.73 0.189593
Target:  5'- cGugGCCGCCgucGCGCCCCAccucGUg--CGCa -3'
miRNA:   3'- -CugCGGUGG---CGCGGGGUa---CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 28472 0.72 0.216343
Target:  5'- aGGCGCuCACCG-GCUgCGUGCUgaCGCg -3'
miRNA:   3'- -CUGCG-GUGGCgCGGgGUACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 8880 0.71 0.240014
Target:  5'- cACGUCACCGCGUCUggCAUGCgcacCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG--GUACGaaa-GCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.