miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 15187 0.66 0.528343
Target:  5'- cGCGgCGCgGCGCUCCAUccGCUcgUCGa -3'
miRNA:   3'- cUGCgGUGgCGCGGGGUA--CGAa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 34780 0.68 0.409428
Target:  5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3'
miRNA:   3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 18076 0.68 0.400278
Target:  5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3'
miRNA:   3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 14746 0.8 0.061716
Target:  5'- aGCGCCACgGCGCCuCCAaguccuugccgcgcUGCUUUCGUc -3'
miRNA:   3'- cUGCGGUGgCGCGG-GGU--------------ACGAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 48680 0.66 0.497215
Target:  5'- cGGCGCCAagcgcaucgcUCGCGCCuuCCcgGCggUgGCg -3'
miRNA:   3'- -CUGCGGU----------GGCGCGG--GGuaCGaaAgCG- -5'
11521 5' -58.4 NC_003085.1 + 15368 0.66 0.497215
Target:  5'- cGACGCC-CCGgGCCagCAUGaCgcgggCGCg -3'
miRNA:   3'- -CUGCGGuGGCgCGGg-GUAC-Gaaa--GCG- -5'
11521 5' -58.4 NC_003085.1 + 5635 0.66 0.487021
Target:  5'- cGugGCgCACCGUcgcggcgccagGCCCUuUGCgcgcacUUCGCg -3'
miRNA:   3'- -CugCG-GUGGCG-----------CGGGGuACGa-----AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 12157 0.66 0.476927
Target:  5'- cGCGUCACC-CGCCCCGUaGaCgagaaUCGCc -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA-C-Gaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 26791 0.67 0.466938
Target:  5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3'
miRNA:   3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 103 0.67 0.428112
Target:  5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3'
miRNA:   3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 23336 0.67 0.447291
Target:  5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3'
miRNA:   3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5'
11521 5' -58.4 NC_003085.1 + 38311 0.66 0.476927
Target:  5'- gGugGCCACCGC-CgaCGUGCUgccgUCGa -3'
miRNA:   3'- -CugCGGUGGCGcGggGUACGAa---AGCg -5'
11521 5' -58.4 NC_003085.1 + 40636 0.66 0.528343
Target:  5'- uGGgGuCCACCGCgGCCgucaCCGUGCcgUCGUu -3'
miRNA:   3'- -CUgC-GGUGGCG-CGG----GGUACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 2434 0.67 0.447291
Target:  5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3'
miRNA:   3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 20610 0.66 0.528343
Target:  5'- aGAgGuuCCACCGCGUCUagcguCAUGCgcggagUCGCg -3'
miRNA:   3'- -CUgC--GGUGGCGCGGG-----GUACGaa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 620 0.66 0.476927
Target:  5'- cGACgGCCACCcCGCCCUG-GCUgccgaacgUCGUc -3'
miRNA:   3'- -CUG-CGGUGGcGCGGGGUaCGAa-------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 26148 0.67 0.441487
Target:  5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 8600 0.68 0.400278
Target:  5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3'
miRNA:   3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5'
11521 5' -58.4 NC_003085.1 + 37035 0.66 0.507504
Target:  5'- cGGCGCCAacauggccCCGCGgCCC-UGCcugUCGa -3'
miRNA:   3'- -CUGCGGU--------GGCGCgGGGuACGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 48454 0.66 0.487021
Target:  5'- cGGCGCUgcucGCCGCGCUCaggaGCg--CGCg -3'
miRNA:   3'- -CUGCGG----UGGCGCGGGgua-CGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.