miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 4042 1.11 0.000293
Target:  5'- cGACGCCACCGCGCCCCAUGCUUUCGCu -3'
miRNA:   3'- -CUGCGGUGGCGCGGGGUACGAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 14746 0.8 0.061716
Target:  5'- aGCGCCACgGCGCCuCCAaguccuugccgcgcUGCUUUCGUc -3'
miRNA:   3'- cUGCGGUGgCGCGG-GGU--------------ACGAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 41824 0.8 0.06406
Target:  5'- cGGCGCCGCCcaaGCGCCCCAUGaguccCGCc -3'
miRNA:   3'- -CUGCGGUGG---CGCGGGGUACgaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 32315 0.76 0.119302
Target:  5'- aGCGCCGCUggugagcacgcgGCGCCCCGUGCUcugggcggugUUGCg -3'
miRNA:   3'- cUGCGGUGG------------CGCGGGGUACGAa---------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 47491 0.76 0.126105
Target:  5'- uGGCGCUGCCGCGUUCCGUGUc--CGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGGGGUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 11779 0.75 0.136986
Target:  5'- cGGCGgCGCCGCGCUCCggGCgugUCGg -3'
miRNA:   3'- -CUGCgGUGGCGCGGGGuaCGaa-AGCg -5'
11521 5' -58.4 NC_003085.1 + 12419 0.74 0.157049
Target:  5'- cGGgGCCGCUGCGCUCCGaggagGCUgugUCGUg -3'
miRNA:   3'- -CUgCGGUGGCGCGGGGUa----CGAa--AGCG- -5'
11521 5' -58.4 NC_003085.1 + 32223 0.74 0.165348
Target:  5'- cGACGCCguaacccACCGCGCCaCCAgccGCccccgUCGCa -3'
miRNA:   3'- -CUGCGG-------UGGCGCGG-GGUa--CGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 34552 0.73 0.179733
Target:  5'- aGCGCCACCaGCcgGCCCgCGUGCgc-CGCa -3'
miRNA:   3'- cUGCGGUGG-CG--CGGG-GUACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 29750 0.73 0.189593
Target:  5'- cGugGCCGCCgucGCGCCCCAccucGUg--CGCa -3'
miRNA:   3'- -CugCGGUGG---CGCGGGGUa---CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 28472 0.72 0.216343
Target:  5'- aGGCGCuCACCG-GCUgCGUGCUgaCGCg -3'
miRNA:   3'- -CUGCG-GUGGCgCGGgGUACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 30421 0.72 0.222067
Target:  5'- aGACGCCGCaguGCGCCCCGcgacaGCgucCGCc -3'
miRNA:   3'- -CUGCGGUGg--CGCGGGGUa----CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 12362 0.72 0.226149
Target:  5'- aGCGgaCCACCGCGCCgucgcgugcgaguuCCAUGCaccggUCGCg -3'
miRNA:   3'- cUGC--GGUGGCGCGG--------------GGUACGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 1000 0.72 0.227919
Target:  5'- gGACGCgGCCGaCGCUCCAggacucGCUcUUCGUg -3'
miRNA:   3'- -CUGCGgUGGC-GCGGGGUa-----CGA-AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 21025 0.72 0.2339
Target:  5'- --aGCCACCGCaCCUCGUGCcagacgCGCg -3'
miRNA:   3'- cugCGGUGGCGcGGGGUACGaaa---GCG- -5'
11521 5' -58.4 NC_003085.1 + 8880 0.71 0.240014
Target:  5'- cACGUCACCGCGUCUggCAUGCgcacCGCc -3'
miRNA:   3'- cUGCGGUGGCGCGGG--GUACGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 44989 0.71 0.244372
Target:  5'- -uCGUCACCGUGCCCUcgucgucgcggaugGUGaUUUCGCg -3'
miRNA:   3'- cuGCGGUGGCGCGGGG--------------UACgAAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 25237 0.71 0.24626
Target:  5'- cGGCGCCGCCcugguGCGCUCCGcgGCgggcgUCGUc -3'
miRNA:   3'- -CUGCGGUGG-----CGCGGGGUa-CGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 37238 0.71 0.25264
Target:  5'- --aGCCGCCGCGCUCaagGCaggcgUCGCa -3'
miRNA:   3'- cugCGGUGGCGCGGGguaCGaa---AGCG- -5'
11521 5' -58.4 NC_003085.1 + 48758 0.71 0.258498
Target:  5'- aGGCGCCACgCGgaguUGCCCCGUggcgacuggcggcGCUucUUCGCg -3'
miRNA:   3'- -CUGCGGUG-GC----GCGGGGUA-------------CGA--AAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.