miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11521 5' -58.4 NC_003085.1 + 30126 0.71 0.259155
Target:  5'- gGACGCCAuCCGCcgccgGCCCCAgcaGCccaCGCa -3'
miRNA:   3'- -CUGCGGU-GGCG-----CGGGGUa--CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 1393 0.71 0.259156
Target:  5'- aGCGCCAUCGCaGUgCCA-GCcUUCGCg -3'
miRNA:   3'- cUGCGGUGGCG-CGgGGUaCGaAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 19766 0.71 0.265808
Target:  5'- aGAUGCCGCCGCGCgCCuccaggGCcgccaggaggUCGCc -3'
miRNA:   3'- -CUGCGGUGGCGCGgGGua----CGaa--------AGCG- -5'
11521 5' -58.4 NC_003085.1 + 22549 0.71 0.265808
Target:  5'- -uCGCCACCGUGCCcuCCAUGUaccugUCGg -3'
miRNA:   3'- cuGCGGUGGCGCGG--GGUACGaa---AGCg -5'
11521 5' -58.4 NC_003085.1 + 48904 0.71 0.265808
Target:  5'- -cCGCCAgCCGCGCCgCCucGCgccgUUCGCc -3'
miRNA:   3'- cuGCGGU-GGCGCGG-GGuaCGa---AAGCG- -5'
11521 5' -58.4 NC_003085.1 + 18642 0.71 0.265808
Target:  5'- aGCGUuuCGCCGUGCCCCcgcgcaucuGUGCgagCGCa -3'
miRNA:   3'- cUGCG--GUGGCGCGGGG---------UACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 34507 0.71 0.272598
Target:  5'- cGACGUCGCCG-GCUCCGaGUUUUgGCu -3'
miRNA:   3'- -CUGCGGUGGCgCGGGGUaCGAAAgCG- -5'
11521 5' -58.4 NC_003085.1 + 11664 0.71 0.272598
Target:  5'- cGCGCCGCCcUGCCCCGUuccaGCcaggCGCg -3'
miRNA:   3'- cUGCGGUGGcGCGGGGUA----CGaaa-GCG- -5'
11521 5' -58.4 NC_003085.1 + 41543 0.7 0.279526
Target:  5'- uGGCGCgGuacuucacCCGCGCCCCAgccuUGCg--CGCc -3'
miRNA:   3'- -CUGCGgU--------GGCGCGGGGU----ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 5252 0.7 0.293074
Target:  5'- cGGCGCCGCCcugccuuccGCGCCaggauggCCGcUGCcUUCGCg -3'
miRNA:   3'- -CUGCGGUGG---------CGCGG-------GGU-ACGaAAGCG- -5'
11521 5' -58.4 NC_003085.1 + 47799 0.7 0.293801
Target:  5'- uACGCgCACCGCGCCCguCA-GCaggCGCa -3'
miRNA:   3'- cUGCG-GUGGCGCGGG--GUaCGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 34643 0.7 0.307883
Target:  5'- cGugGCCAUgGCGUCCCcuugauaAUGCUUgucauacaagCGCu -3'
miRNA:   3'- -CugCGGUGgCGCGGGG-------UACGAAa---------GCG- -5'
11521 5' -58.4 NC_003085.1 + 14307 0.7 0.308639
Target:  5'- aGGgGCUguaACCGgGCCCC-UGCUUcCGCu -3'
miRNA:   3'- -CUgCGG---UGGCgCGGGGuACGAAaGCG- -5'
11521 5' -58.4 NC_003085.1 + 8917 0.7 0.308639
Target:  5'- cACGUCAUgGcCGCCCCuccUGCUcgCGCa -3'
miRNA:   3'- cUGCGGUGgC-GCGGGGu--ACGAaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 24066 0.7 0.316269
Target:  5'- uGACGCCACUGCGCgaCUCAaugGUcgUCGUg -3'
miRNA:   3'- -CUGCGGUGGCGCG--GGGUa--CGaaAGCG- -5'
11521 5' -58.4 NC_003085.1 + 24554 0.69 0.339197
Target:  5'- gGugGCCACCGcCGCCauguccuCCAccUGCgagCGCc -3'
miRNA:   3'- -CugCGGUGGC-GCGG-------GGU--ACGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 34162 0.69 0.340009
Target:  5'- uGACGCCACCGaaccCGCCUCAUcgGCgg-CGg -3'
miRNA:   3'- -CUGCGGUGGC----GCGGGGUA--CGaaaGCg -5'
11521 5' -58.4 NC_003085.1 + 7350 0.69 0.348204
Target:  5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3'
miRNA:   3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5'
11521 5' -58.4 NC_003085.1 + 16202 0.69 0.348204
Target:  5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3'
miRNA:   3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5'
11521 5' -58.4 NC_003085.1 + 30788 0.69 0.348204
Target:  5'- gGACGCCGguCCGCuucCCCCuUGCgccgcUUCGCc -3'
miRNA:   3'- -CUGCGGU--GGCGc--GGGGuACGa----AAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.