Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 12157 | 0.66 | 0.476927 |
Target: 5'- cGCGUCACC-CGCCCCGUaGaCgagaaUCGCc -3' miRNA: 3'- cUGCGGUGGcGCGGGGUA-C-Gaa---AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 43114 | 0.66 | 0.475923 |
Target: 5'- cACGCCgggaacaGCCuuggcguagaGCGCgCCCAUGCUg-CGCg -3' miRNA: 3'- cUGCGG-------UGG----------CGCG-GGGUACGAaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 26791 | 0.67 | 0.466938 |
Target: 5'- cGGCGCCgcGCCGUcaccGCCCUgcGCg--CGCu -3' miRNA: 3'- -CUGCGG--UGGCG----CGGGGuaCGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 27654 | 0.67 | 0.451184 |
Target: 5'- gGACGCCGCauCGCCaCCgacuacggcggcgacGUGCUggugcugUCGCg -3' miRNA: 3'- -CUGCGGUGgcGCGG-GG---------------UACGAa------AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2434 | 0.67 | 0.447291 |
Target: 5'- cGCGCCgcggccucgcACUGCGCCuCCcgGaugUCGCa -3' miRNA: 3'- cUGCGG----------UGGCGCGG-GGuaCgaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 23336 | 0.67 | 0.447291 |
Target: 5'- cGACGa-GCUGCGCCUUGUGCgcgggcggCGCg -3' miRNA: 3'- -CUGCggUGGCGCGGGGUACGaaa-----GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 17919 | 0.67 | 0.447291 |
Target: 5'- cGGCGCCugCGggcaccagcacUGCCCCAgggGCcugcCGCa -3' miRNA: 3'- -CUGCGGugGC-----------GCGGGGUa--CGaaa-GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 26148 | 0.67 | 0.441487 |
Target: 5'- uGCGUCACCGUGCCUugcgagaaagcugcuCgAUGCgcUCGCc -3' miRNA: 3'- cUGCGGUGGCGCGGG---------------G-UACGaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 43533 | 0.67 | 0.437641 |
Target: 5'- cGGCGCCgaagGCgGCGCgUCCA-GCUUgCGCg -3' miRNA: 3'- -CUGCGG----UGgCGCG-GGGUaCGAAaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 17598 | 0.67 | 0.437641 |
Target: 5'- cACGCCuGCUGCuCCgCCGUGCcuuccgUCGCg -3' miRNA: 3'- cUGCGG-UGGCGcGG-GGUACGaa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 38834 | 0.67 | 0.437641 |
Target: 5'- gGGCGCacuGCCGCGUcguCCCAcUGCgacggCGCg -3' miRNA: 3'- -CUGCGg--UGGCGCG---GGGU-ACGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 18939 | 0.67 | 0.436683 |
Target: 5'- aGCGCCAUCGCcuacaggGCCCCGcgacgGUgg-CGCg -3' miRNA: 3'- cUGCGGUGGCG-------CGGGGUa----CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 103 | 0.67 | 0.428112 |
Target: 5'- aGCGCCugCGUaGCgCCCAUGUa--CGCc -3' miRNA: 3'- cUGCGGugGCG-CG-GGGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2371 | 0.67 | 0.428112 |
Target: 5'- cGAgGCCGCgGCGCgCgA-GCUcUCGCa -3' miRNA: 3'- -CUgCGGUGgCGCGgGgUaCGAaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 16259 | 0.67 | 0.428112 |
Target: 5'- uGCGCCGCCGC-CUCCAggacgcccGCUacuggCGCg -3' miRNA: 3'- cUGCGGUGGCGcGGGGUa-------CGAaa---GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 34780 | 0.68 | 0.409428 |
Target: 5'- cGCGCCGCCGUGgC-CAUGCaaccggCGCc -3' miRNA: 3'- cUGCGGUGGCGCgGgGUACGaaa---GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 30255 | 0.68 | 0.409427 |
Target: 5'- cGGCGCCcagcccCCGcCGCCCCAgGCggaCGUg -3' miRNA: 3'- -CUGCGGu-----GGC-GCGGGGUaCGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 18076 | 0.68 | 0.400278 |
Target: 5'- gGGCGCCAguCCGCGCUcucgcagcuCCGUGCcc-UGCg -3' miRNA: 3'- -CUGCGGU--GGCGCGG---------GGUACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 8600 | 0.68 | 0.400278 |
Target: 5'- uGGCGUCACCgccuucgccuGCGCCCgCugGUGCgcgUCGUa -3' miRNA: 3'- -CUGCGGUGG----------CGCGGG-G--UACGaa-AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 9192 | 0.68 | 0.39126 |
Target: 5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3' miRNA: 3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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