Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11521 | 5' | -58.4 | NC_003085.1 | + | 38006 | 0.68 | 0.39126 |
Target: 5'- gGACGCucaCACCGCgucgGCCCCAacgGCgacCGCu -3' miRNA: 3'- -CUGCG---GUGGCG----CGGGGUa--CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 27027 | 0.68 | 0.39126 |
Target: 5'- -gUGCCugCGCGCUCgAcGCUgccaUUCGCc -3' miRNA: 3'- cuGCGGugGCGCGGGgUaCGA----AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 42522 | 0.68 | 0.39126 |
Target: 5'- cACGCCACCuGCgugGCCUCccGCU-UCGCc -3' miRNA: 3'- cUGCGGUGG-CG---CGGGGuaCGAaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 9192 | 0.68 | 0.39126 |
Target: 5'- cGGCGCgGguacucCUGCGCCCUGUGU--UCGCc -3' miRNA: 3'- -CUGCGgU------GGCGCGGGGUACGaaAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 19024 | 0.68 | 0.390365 |
Target: 5'- cGCGCCACCGUcggcgggGCCCUGUagGCgauggCGCu -3' miRNA: 3'- cUGCGGUGGCG-------CGGGGUA--CGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 14014 | 0.68 | 0.38769 |
Target: 5'- cGACGCUccgcuucuucuucgGCgCGCGCCCCGUccgaaacGCg--CGCa -3' miRNA: 3'- -CUGCGG--------------UG-GCGCGGGGUA-------CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 42818 | 0.68 | 0.382375 |
Target: 5'- gGAUGCCguccACCGCGCCCgCAUcGCcccgaCGCc -3' miRNA: 3'- -CUGCGG----UGGCGCGGG-GUA-CGaaa--GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 2717 | 0.68 | 0.382375 |
Target: 5'- uGACGCCACCaCGgCCCAaGCggguaGCu -3' miRNA: 3'- -CUGCGGUGGcGCgGGGUaCGaaag-CG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 48762 | 0.68 | 0.382375 |
Target: 5'- -cCGCCacGCCGCGCaacggugcgCCCAUGUUcgUCGUc -3' miRNA: 3'- cuGCGG--UGGCGCG---------GGGUACGAa-AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 45849 | 0.68 | 0.380614 |
Target: 5'- cGGCGCggcgaguccugaCGCCGCGUCCgGUGCUgguggugacgaCGCa -3' miRNA: 3'- -CUGCG------------GUGGCGCGGGgUACGAaa---------GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 42895 | 0.68 | 0.373626 |
Target: 5'- cGCGCCGCCaGCGCcggaCCCGUGCa----- -3' miRNA: 3'- cUGCGGUGG-CGCG----GGGUACGaaagcg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 10614 | 0.68 | 0.373626 |
Target: 5'- -cCGCCACuCGCGCUCCA-GCacUUCGa -3' miRNA: 3'- cuGCGGUG-GCGCGGGGUaCGa-AAGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 15282 | 0.69 | 0.365013 |
Target: 5'- cAC-CCGCCGCGCCCgcguCAUGCUg--GCc -3' miRNA: 3'- cUGcGGUGGCGCGGG----GUACGAaagCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 30788 | 0.69 | 0.348204 |
Target: 5'- gGACGCCGguCCGCuucCCCCuUGCgccgcUUCGCc -3' miRNA: 3'- -CUGCGGU--GGCGc--GGGGuACGa----AAGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 41064 | 0.69 | 0.348204 |
Target: 5'- cGACGCCGCUGggccaGCCCUugccGCUUgcgagCGCu -3' miRNA: 3'- -CUGCGGUGGCg----CGGGGua--CGAAa----GCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 7350 | 0.69 | 0.348204 |
Target: 5'- --gGCUACaCGCGCCCCuggGCgc-CGCu -3' miRNA: 3'- cugCGGUG-GCGCGGGGua-CGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 16202 | 0.69 | 0.348204 |
Target: 5'- -cCGUgACCGCGCUCCucgccGUGCUccucaUCGCg -3' miRNA: 3'- cuGCGgUGGCGCGGGG-----UACGAa----AGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 34162 | 0.69 | 0.340009 |
Target: 5'- uGACGCCACCGaaccCGCCUCAUcgGCgg-CGg -3' miRNA: 3'- -CUGCGGUGGC----GCGGGGUA--CGaaaGCg -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 24554 | 0.69 | 0.339197 |
Target: 5'- gGugGCCACCGcCGCCauguccuCCAccUGCgagCGCc -3' miRNA: 3'- -CugCGGUGGC-GCGG-------GGU--ACGaaaGCG- -5' |
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11521 | 5' | -58.4 | NC_003085.1 | + | 24066 | 0.7 | 0.316269 |
Target: 5'- uGACGCCACUGCGCgaCUCAaugGUcgUCGUg -3' miRNA: 3'- -CUGCGGUGGCGCG--GGGUa--CGaaAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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