Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 37066 | 0.67 | 0.548136 |
Target: 5'- gCGCcGACGAcGuGCGGaugcAGGUggacGGCGCGCAg -3' miRNA: 3'- -GUGaUUGCU-C-CGCU----UCCA----CCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 38196 | 0.73 | 0.235006 |
Target: 5'- gGCUGGCGgcaacucGGGCGgcGGUGGCucGUGCAc -3' miRNA: 3'- gUGAUUGC-------UCCGCuuCCACCG--CGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 39539 | 0.7 | 0.369978 |
Target: 5'- gCACgucGGCagGGGGCGGagguauGGGUGGCGgGCAa -3' miRNA: 3'- -GUGa--UUG--CUCCGCU------UCCACCGCgCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 41031 | 0.68 | 0.471453 |
Target: 5'- gCGCUGGCGGGGCcacagggacgccugGGAGaGgcaccucucGGCGCGCGg -3' miRNA: 3'- -GUGAUUGCUCCG--------------CUUC-Ca--------CCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 42610 | 0.84 | 0.041175 |
Target: 5'- gCGCUGGcCGAGGCGAagcgggaggccacgcAGGUGGCGUGCGa -3' miRNA: 3'- -GUGAUU-GCUCCGCU---------------UCCACCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 42751 | 0.68 | 0.465385 |
Target: 5'- aCACuUGACGAguaccgggcccgcacGGCGGugcaguggcuauggAGGUGGCGCGaCGa -3' miRNA: 3'- -GUG-AUUGCU---------------CCGCU--------------UCCACCGCGC-GU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 45333 | 0.72 | 0.275229 |
Target: 5'- uCGCUAACGAGGuCGGcccccAGGUGGCuG-GCAg -3' miRNA: 3'- -GUGAUUGCUCC-GCU-----UCCACCG-CgCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 45877 | 0.67 | 0.548136 |
Target: 5'- gCACUGgugGCGAGGuUGGAGGcagggacGGCGCgGCGa -3' miRNA: 3'- -GUGAU---UGCUCC-GCUUCCa------CCGCG-CGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 46846 | 0.66 | 0.63605 |
Target: 5'- uCGCg---GAGGCGGAGGUGGUGg--- -3' miRNA: 3'- -GUGauugCUCCGCUUCCACCGCgcgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 46915 | 0.67 | 0.548136 |
Target: 5'- uCACc-GCGgcAGGCGGcacAGGUucGGCGCGCGc -3' miRNA: 3'- -GUGauUGC--UCCGCU---UCCA--CCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 47729 | 0.68 | 0.495076 |
Target: 5'- uGCUGACG-GGCGc-GGUG-CGCGUAg -3' miRNA: 3'- gUGAUUGCuCCGCuuCCACcGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 48987 | 0.68 | 0.484737 |
Target: 5'- gAUUGGCGAacGGCGcGAGGcGGCGCGg- -3' miRNA: 3'- gUGAUUGCU--CCGC-UUCCaCCGCGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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