miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11530 5' -56.3 NC_003085.1 + 606 0.67 0.547055
Target:  5'- gACUGGCGccguccuGGGCGcgcucGAGGcUGGCGCGg- -3'
miRNA:   3'- gUGAUUGC-------UCCGC-----UUCC-ACCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 8523 0.69 0.415538
Target:  5'- aGCgGGCGcAGGCGAAGGcGGUGaCGCc -3'
miRNA:   3'- gUGaUUGC-UCCGCUUCCaCCGC-GCGu -5'
11530 5' -56.3 NC_003085.1 + 8768 1.08 0.000757
Target:  5'- uCACUAACGAGGCGAAGGUGGCGCGCAg -3'
miRNA:   3'- -GUGAUUGCUCCGCUUCCACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 8981 0.68 0.516045
Target:  5'- gGCgu-CGAGGCGcaaggccuuGGUGGCgguGCGCAu -3'
miRNA:   3'- gUGauuGCUCCGCuu-------CCACCG---CGCGU- -5'
11530 5' -56.3 NC_003085.1 + 10565 0.73 0.254796
Target:  5'- gGCgcaaGAGGCGAAGGagcgGGCGCaGCAc -3'
miRNA:   3'- gUGauugCUCCGCUUCCa---CCGCG-CGU- -5'
11530 5' -56.3 NC_003085.1 + 11592 0.69 0.454366
Target:  5'- gGCUGgaACGGGGC-AGGGcGGCGCGa- -3'
miRNA:   3'- gUGAU--UGCUCCGcUUCCaCCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 12089 0.66 0.60285
Target:  5'- -uCU-ACGGGGCG--GGUGacGCGCGCAa -3'
miRNA:   3'- guGAuUGCUCCGCuuCCAC--CGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 12742 0.7 0.378813
Target:  5'- ------aGGGGcCGGAGGUGGUGCGUg -3'
miRNA:   3'- gugauugCUCC-GCUUCCACCGCGCGu -5'
11530 5' -56.3 NC_003085.1 + 13557 0.67 0.548136
Target:  5'- aGCac-CGAGGCGAGcaaGGCGCGCGu -3'
miRNA:   3'- gUGauuGCUCCGCUUccaCCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 16339 0.67 0.558976
Target:  5'- cCAgUAGCG-GGCGuccugGAGGcGGCgGCGCAg -3'
miRNA:   3'- -GUgAUUGCuCCGC-----UUCCaCCG-CGCGU- -5'
11530 5' -56.3 NC_003085.1 + 16552 0.7 0.396902
Target:  5'- ---cAGCGAcGG-GAAGGcGGCGCGCAg -3'
miRNA:   3'- gugaUUGCU-CCgCUUCCaCCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 17432 0.66 0.60285
Target:  5'- uCGCUGGCGuuGCacuGAGGUGGCuCGCc -3'
miRNA:   3'- -GUGAUUGCucCGc--UUCCACCGcGCGu -5'
11530 5' -56.3 NC_003085.1 + 20324 0.77 0.144672
Target:  5'- gCACcAGCGAcugcgccaccugGGCGAAGGUGGCGaCGUAc -3'
miRNA:   3'- -GUGaUUGCU------------CCGCUUCCACCGC-GCGU- -5'
11530 5' -56.3 NC_003085.1 + 20405 0.71 0.356138
Target:  5'- gCGCcGugGcccagaguucauccaGGGUGAAGGUGGCGgGCGc -3'
miRNA:   3'- -GUGaUugC---------------UCCGCUUCCACCGCgCGU- -5'
11530 5' -56.3 NC_003085.1 + 25332 0.66 0.60285
Target:  5'- cCACcGACaAGGUGGA--UGGCGCGCGc -3'
miRNA:   3'- -GUGaUUGcUCCGCUUccACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 26920 0.69 0.425055
Target:  5'- -cCUGAauCGAggguGGCGggGGcacacgccUGGCGCGCAg -3'
miRNA:   3'- guGAUU--GCU----CCGCuuCC--------ACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 30329 0.66 0.63605
Target:  5'- -cCUGGgGcGGCGggGGcugGGCGcCGCGc -3'
miRNA:   3'- guGAUUgCuCCGCuuCCa--CCGC-GCGU- -5'
11530 5' -56.3 NC_003085.1 + 30696 0.71 0.344329
Target:  5'- uGCUGAgGAGGCGAAGc-GGCGCa-- -3'
miRNA:   3'- gUGAUUgCUCCGCUUCcaCCGCGcgu -5'
11530 5' -56.3 NC_003085.1 + 32123 0.7 0.387788
Target:  5'- gCACUcgguggugcGACgGGGGCGGcuGGUGGCGCGg- -3'
miRNA:   3'- -GUGA---------UUG-CUCCGCUu-CCACCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 34085 0.71 0.352735
Target:  5'- cCGCcGAUGAGGCGGGuucGGUGGCGUcagggccaccGCAu -3'
miRNA:   3'- -GUGaUUGCUCCGCUU---CCACCGCG----------CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.