Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 8768 | 1.08 | 0.000757 |
Target: 5'- uCACUAACGAGGCGAAGGUGGCGCGCAg -3' miRNA: 3'- -GUGAUUGCUCCGCUUCCACCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 25332 | 0.66 | 0.60285 |
Target: 5'- cCACcGACaAGGUGGA--UGGCGCGCGc -3' miRNA: 3'- -GUGaUUGcUCCGCUUccACCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 12089 | 0.66 | 0.60285 |
Target: 5'- -uCU-ACGGGGCG--GGUGacGCGCGCAa -3' miRNA: 3'- guGAuUGCUCCGCuuCCAC--CGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 37066 | 0.67 | 0.548136 |
Target: 5'- gCGCcGACGAcGuGCGGaugcAGGUggacGGCGCGCAg -3' miRNA: 3'- -GUGaUUGCU-C-CGCU----UCCA----CCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 13557 | 0.67 | 0.548136 |
Target: 5'- aGCac-CGAGGCGAGcaaGGCGCGCGu -3' miRNA: 3'- gUGauuGCUCCGCUUccaCCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 46915 | 0.67 | 0.548136 |
Target: 5'- uCACc-GCGgcAGGCGGcacAGGUucGGCGCGCGc -3' miRNA: 3'- -GUGauUGC--UCCGCU---UCCA--CCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 606 | 0.67 | 0.547055 |
Target: 5'- gACUGGCGccguccuGGGCGcgcucGAGGcUGGCGCGg- -3' miRNA: 3'- gUGAUUGC-------UCCGC-----UUCC-ACCGCGCgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 47729 | 0.68 | 0.495076 |
Target: 5'- uGCUGACG-GGCGc-GGUG-CGCGUAg -3' miRNA: 3'- gUGAUUGCuCCGCuuCCACcGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 11592 | 0.69 | 0.454366 |
Target: 5'- gGCUGgaACGGGGC-AGGGcGGCGCGa- -3' miRNA: 3'- gUGAU--UGCUCCGcUUCCaCCGCGCgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 8523 | 0.69 | 0.415538 |
Target: 5'- aGCgGGCGcAGGCGAAGGcGGUGaCGCc -3' miRNA: 3'- gUGaUUGC-UCCGCUUCCaCCGC-GCGu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 38196 | 0.73 | 0.235006 |
Target: 5'- gGCUGGCGgcaacucGGGCGgcGGUGGCucGUGCAc -3' miRNA: 3'- gUGAUUGC-------UCCGCuuCCACCG--CGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 10565 | 0.73 | 0.254796 |
Target: 5'- gGCgcaaGAGGCGAAGGagcgGGCGCaGCAc -3' miRNA: 3'- gUGauugCUCCGCUUCCa---CCGCG-CGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 45333 | 0.72 | 0.275229 |
Target: 5'- uCGCUAACGAGGuCGGcccccAGGUGGCuG-GCAg -3' miRNA: 3'- -GUGAUUGCUCC-GCU-----UCCACCG-CgCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 30696 | 0.71 | 0.344329 |
Target: 5'- uGCUGAgGAGGCGAAGc-GGCGCa-- -3' miRNA: 3'- gUGAUUgCUCCGCUUCcaCCGCGcgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 34085 | 0.71 | 0.352735 |
Target: 5'- cCGCcGAUGAGGCGGGuucGGUGGCGUcagggccaccGCAu -3' miRNA: 3'- -GUGaUUGCUCCGCUU---CCACCGCG----------CGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 12742 | 0.7 | 0.378813 |
Target: 5'- ------aGGGGcCGGAGGUGGUGCGUg -3' miRNA: 3'- gugauugCUCC-GCUUCCACCGCGCGu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 32123 | 0.7 | 0.387788 |
Target: 5'- gCACUcgguggugcGACgGGGGCGGcuGGUGGCGCGg- -3' miRNA: 3'- -GUGA---------UUG-CUCCGCUu-CCACCGCGCgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 42610 | 0.84 | 0.041175 |
Target: 5'- gCGCUGGcCGAGGCGAagcgggaggccacgcAGGUGGCGUGCGa -3' miRNA: 3'- -GUGAUU-GCUCCGCU---------------UCCACCGCGCGU- -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 46846 | 0.66 | 0.63605 |
Target: 5'- uCGCg---GAGGCGGAGGUGGUGg--- -3' miRNA: 3'- -GUGauugCUCCGCUUCCACCGCgcgu -5' |
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11530 | 5' | -56.3 | NC_003085.1 | + | 17432 | 0.66 | 0.60285 |
Target: 5'- uCGCUGGCGuuGCacuGAGGUGGCuCGCc -3' miRNA: 3'- -GUGAUUGCucCGc--UUCCACCGcGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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