miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11530 5' -56.3 NC_003085.1 + 48987 0.68 0.484737
Target:  5'- gAUUGGCGAacGGCGcGAGGcGGCGCGg- -3'
miRNA:   3'- gUGAUUGCU--CCGC-UUCCaCCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 47729 0.68 0.495076
Target:  5'- uGCUGACG-GGCGc-GGUG-CGCGUAg -3'
miRNA:   3'- gUGAUUGCuCCGCuuCCACcGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 46915 0.67 0.548136
Target:  5'- uCACc-GCGgcAGGCGGcacAGGUucGGCGCGCGc -3'
miRNA:   3'- -GUGauUGC--UCCGCU---UCCA--CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 46846 0.66 0.63605
Target:  5'- uCGCg---GAGGCGGAGGUGGUGg--- -3'
miRNA:   3'- -GUGauugCUCCGCUUCCACCGCgcgu -5'
11530 5' -56.3 NC_003085.1 + 45877 0.67 0.548136
Target:  5'- gCACUGgugGCGAGGuUGGAGGcagggacGGCGCgGCGa -3'
miRNA:   3'- -GUGAU---UGCUCC-GCUUCCa------CCGCG-CGU- -5'
11530 5' -56.3 NC_003085.1 + 45333 0.72 0.275229
Target:  5'- uCGCUAACGAGGuCGGcccccAGGUGGCuG-GCAg -3'
miRNA:   3'- -GUGAUUGCUCC-GCU-----UCCACCG-CgCGU- -5'
11530 5' -56.3 NC_003085.1 + 42751 0.68 0.465385
Target:  5'- aCACuUGACGAguaccgggcccgcacGGCGGugcaguggcuauggAGGUGGCGCGaCGa -3'
miRNA:   3'- -GUG-AUUGCU---------------CCGCU--------------UCCACCGCGC-GU- -5'
11530 5' -56.3 NC_003085.1 + 42610 0.84 0.041175
Target:  5'- gCGCUGGcCGAGGCGAagcgggaggccacgcAGGUGGCGUGCGa -3'
miRNA:   3'- -GUGAUU-GCUCCGCU---------------UCCACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 41031 0.68 0.471453
Target:  5'- gCGCUGGCGGGGCcacagggacgccugGGAGaGgcaccucucGGCGCGCGg -3'
miRNA:   3'- -GUGAUUGCUCCG--------------CUUC-Ca--------CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 39539 0.7 0.369978
Target:  5'- gCACgucGGCagGGGGCGGagguauGGGUGGCGgGCAa -3'
miRNA:   3'- -GUGa--UUG--CUCCGCU------UCCACCGCgCGU- -5'
11530 5' -56.3 NC_003085.1 + 38196 0.73 0.235006
Target:  5'- gGCUGGCGgcaacucGGGCGgcGGUGGCucGUGCAc -3'
miRNA:   3'- gUGAUUGC-------UCCGCuuCCACCG--CGCGU- -5'
11530 5' -56.3 NC_003085.1 + 37066 0.67 0.548136
Target:  5'- gCGCcGACGAcGuGCGGaugcAGGUggacGGCGCGCAg -3'
miRNA:   3'- -GUGaUUGCU-C-CGCU----UCCA----CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 34085 0.71 0.352735
Target:  5'- cCGCcGAUGAGGCGGGuucGGUGGCGUcagggccaccGCAu -3'
miRNA:   3'- -GUGaUUGCUCCGCUU---CCACCGCG----------CGU- -5'
11530 5' -56.3 NC_003085.1 + 32123 0.7 0.387788
Target:  5'- gCACUcgguggugcGACgGGGGCGGcuGGUGGCGCGg- -3'
miRNA:   3'- -GUGA---------UUG-CUCCGCUu-CCACCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 30696 0.71 0.344329
Target:  5'- uGCUGAgGAGGCGAAGc-GGCGCa-- -3'
miRNA:   3'- gUGAUUgCUCCGCUUCcaCCGCGcgu -5'
11530 5' -56.3 NC_003085.1 + 30329 0.66 0.63605
Target:  5'- -cCUGGgGcGGCGggGGcugGGCGcCGCGc -3'
miRNA:   3'- guGAUUgCuCCGCuuCCa--CCGC-GCGU- -5'
11530 5' -56.3 NC_003085.1 + 26920 0.69 0.425055
Target:  5'- -cCUGAauCGAggguGGCGggGGcacacgccUGGCGCGCAg -3'
miRNA:   3'- guGAUU--GCU----CCGCuuCC--------ACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 25332 0.66 0.60285
Target:  5'- cCACcGACaAGGUGGA--UGGCGCGCGc -3'
miRNA:   3'- -GUGaUUGcUCCGCUUccACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 20405 0.71 0.356138
Target:  5'- gCGCcGugGcccagaguucauccaGGGUGAAGGUGGCGgGCGc -3'
miRNA:   3'- -GUGaUugC---------------UCCGCUUCCACCGCgCGU- -5'
11530 5' -56.3 NC_003085.1 + 20324 0.77 0.144672
Target:  5'- gCACcAGCGAcugcgccaccugGGCGAAGGUGGCGaCGUAc -3'
miRNA:   3'- -GUGaUUGCU------------CCGCUUCCACCGC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.