Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 39539 | 0.7 | 0.369978 |
Target: 5'- gCACgucGGCagGGGGCGGagguauGGGUGGCGgGCAa -3' miRNA: 3'- -GUGa--UUG--CUCCGCU------UCCACCGCgCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 20405 | 0.71 | 0.356138 |
Target: 5'- gCGCcGugGcccagaguucauccaGGGUGAAGGUGGCGgGCGc -3' miRNA: 3'- -GUGaUugC---------------UCCGCUUCCACCGCgCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 20324 | 0.77 | 0.144672 |
Target: 5'- gCACcAGCGAcugcgccaccugGGCGAAGGUGGCGaCGUAc -3' miRNA: 3'- -GUGaUUGCU------------CCGCUUCCACCGC-GCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 41031 | 0.68 | 0.471453 |
Target: 5'- gCGCUGGCGGGGCcacagggacgccugGGAGaGgcaccucucGGCGCGCGg -3' miRNA: 3'- -GUGAUUGCUCCG--------------CUUC-Ca--------CCGCGCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 48987 | 0.68 | 0.484737 |
Target: 5'- gAUUGGCGAacGGCGcGAGGcGGCGCGg- -3' miRNA: 3'- gUGAUUGCU--CCGC-UUCCaCCGCGCgu -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 8981 | 0.68 | 0.516045 |
Target: 5'- gGCgu-CGAGGCGcaaggccuuGGUGGCgguGCGCAu -3' miRNA: 3'- gUGauuGCUCCGCuu-------CCACCG---CGCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 45877 | 0.67 | 0.548136 |
Target: 5'- gCACUGgugGCGAGGuUGGAGGcagggacGGCGCgGCGa -3' miRNA: 3'- -GUGAU---UGCUCC-GCUUCCa------CCGCG-CGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 16339 | 0.67 | 0.558976 |
Target: 5'- cCAgUAGCG-GGCGuccugGAGGcGGCgGCGCAg -3' miRNA: 3'- -GUgAUUGCuCCGC-----UUCCaCCG-CGCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 17432 | 0.66 | 0.60285 |
Target: 5'- uCGCUGGCGuuGCacuGAGGUGGCuCGCc -3' miRNA: 3'- -GUGAUUGCucCGc--UUCCACCGcGCGu -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 46846 | 0.66 | 0.63605 |
Target: 5'- uCGCg---GAGGCGGAGGUGGUGg--- -3' miRNA: 3'- -GUGauugCUCCGCUUCCACCGCgcgu -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 30329 | 0.66 | 0.63605 |
Target: 5'- -cCUGGgGcGGCGggGGcugGGCGcCGCGc -3' miRNA: 3'- guGAUUgCuCCGCuuCCa--CCGC-GCGU- -5' |
|||||||
11530 | 5' | -56.3 | NC_003085.1 | + | 42610 | 0.84 | 0.041175 |
Target: 5'- gCGCUGGcCGAGGCGAagcgggaggccacgcAGGUGGCGUGCGa -3' miRNA: 3'- -GUGAUU-GCUCCGCU---------------UCCACCGCGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home