miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 40330 0.68 0.272909
Target:  5'- aAGGGCuggCGCGuGCCUCaGUGGGCggugggcaaGCCg -3'
miRNA:   3'- -UCCCG---GCGC-CGGAG-CGCCUGaag------UGG- -5'
11532 3' -62 NC_003085.1 + 14804 0.68 0.270257
Target:  5'- -aGGCCGacauccuccgcgaGGCCaUCGCGGAgUggugCGCCa -3'
miRNA:   3'- ucCCGGCg------------CCGG-AGCGCCUgAa---GUGG- -5'
11532 3' -62 NC_003085.1 + 24877 0.68 0.259857
Target:  5'- --aGCCGCGcGCCgCGaCGGGCUgagcggCACCa -3'
miRNA:   3'- uccCGGCGC-CGGaGC-GCCUGAa-----GUGG- -5'
11532 3' -62 NC_003085.1 + 47396 0.68 0.253524
Target:  5'- aAGGGCgGCGcGCUggagaUgGUGGACaacgUCGCCa -3'
miRNA:   3'- -UCCCGgCGC-CGG-----AgCGCCUGa---AGUGG- -5'
11532 3' -62 NC_003085.1 + 32910 0.69 0.247318
Target:  5'- -cGGCgCGCGGCCUCuCGGGCcccaaucagUCGCg -3'
miRNA:   3'- ucCCG-GCGCCGGAGcGCCUGa--------AGUGg -5'
11532 3' -62 NC_003085.1 + 24709 0.69 0.235285
Target:  5'- cGGcGGCaucgGCGGCUUCGCGGguGCcaaCACCa -3'
miRNA:   3'- -UC-CCGg---CGCCGGAGCGCC--UGaa-GUGG- -5'
11532 3' -62 NC_003085.1 + 2267 0.69 0.235285
Target:  5'- gGGGGCCucgucGCGGacuuCUUCGCGGGCUcCGgCa -3'
miRNA:   3'- -UCCCGG-----CGCC----GGAGCGCCUGAaGUgG- -5'
11532 3' -62 NC_003085.1 + 30120 0.69 0.234697
Target:  5'- uGGGCCuGCugcaacuugugcuGGCCcuggaagcCGCGGACgacgUCGCCa -3'
miRNA:   3'- uCCCGG-CG-------------CCGGa-------GCGCCUGa---AGUGG- -5'
11532 3' -62 NC_003085.1 + 44852 0.69 0.223747
Target:  5'- cGGcGCCGaguuGcGCCUCgucgGCGGACUaccUCACCg -3'
miRNA:   3'- uCC-CGGCg---C-CGGAG----CGCCUGA---AGUGG- -5'
11532 3' -62 NC_003085.1 + 26149 0.69 0.223183
Target:  5'- cGGGCUGCuGGCCaccgacgUCGCGGACccguaugCGuCCg -3'
miRNA:   3'- uCCCGGCG-CCGG-------AGCGCCUGaa-----GU-GG- -5'
11532 3' -62 NC_003085.1 + 22879 0.69 0.222058
Target:  5'- cGGGGCCGUcGCCUCcuggGCGGgagcggccguugccGCUgccgUCGCCa -3'
miRNA:   3'- -UCCCGGCGcCGGAG----CGCC--------------UGA----AGUGG- -5'
11532 3' -62 NC_003085.1 + 25371 0.7 0.212693
Target:  5'- cGGGCaCGCcGaCg-GCGGGCUUCACCg -3'
miRNA:   3'- uCCCG-GCGcCgGagCGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 40765 0.7 0.212693
Target:  5'- uGGGCCucguGUGGCUgacguUgGCGGACggCACCc -3'
miRNA:   3'- uCCCGG----CGCCGG-----AgCGCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 22513 0.7 0.212693
Target:  5'- cGGGCUgGCGcuCCUCGaCGGACUgguaguccggggUCACCu -3'
miRNA:   3'- uCCCGG-CGCc-GGAGC-GCCUGA------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 23781 0.7 0.207345
Target:  5'- cGGGGCCGUcuugacggaggaGGCUgcugCGCGGGCccgCugCg -3'
miRNA:   3'- -UCCCGGCG------------CCGGa---GCGCCUGaa-GugG- -5'
11532 3' -62 NC_003085.1 + 14136 0.7 0.196995
Target:  5'- gAGGcGCuCGCagauGGCCUCGaCGGACa-CGCCg -3'
miRNA:   3'- -UCC-CG-GCG----CCGGAGC-GCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 41560 0.71 0.160002
Target:  5'- cGGGCCGguagcaGcGCUggCGCGGuACUUCACCc -3'
miRNA:   3'- uCCCGGCg-----C-CGGa-GCGCC-UGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 34618 0.72 0.153397
Target:  5'- cGGGCCggcugGUGGCgCUCGCGGccGCUguguugcugacgcugUCGCCg -3'
miRNA:   3'- uCCCGG-----CGCCG-GAGCGCC--UGA---------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 15326 0.72 0.151785
Target:  5'- -cGGCCGCGGCCUC-CGGG--UCGuCCu -3'
miRNA:   3'- ucCCGGCGCCGGAGcGCCUgaAGU-GG- -5'
11532 3' -62 NC_003085.1 + 21943 0.72 0.151785
Target:  5'- gAGGGaCaCGGCCUCG-GG-CUUCACCu -3'
miRNA:   3'- -UCCCgGcGCCGGAGCgCCuGAAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.