Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11532 | 3' | -62 | NC_003085.1 | + | 35956 | 0.66 | 0.33815 |
Target: 5'- uGGGacuCCGCGGCCcggugucaUCGCGuACUggACCa -3' miRNA: 3'- uCCC---GGCGCCGG--------AGCGCcUGAagUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 30002 | 0.66 | 0.337366 |
Target: 5'- gAGcGGCCcuggGCGGCCUuggcgacgucgucCGCGG-CUUCcaggGCCa -3' miRNA: 3'- -UC-CCGG----CGCCGGA-------------GCGCCuGAAG----UGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 15057 | 0.67 | 0.330371 |
Target: 5'- cAGGGCCaaaGCCUCGUGGGagUUgGCCc -3' miRNA: 3'- -UCCCGGcgcCGGAGCGCCUg-AAgUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 696 | 0.67 | 0.330371 |
Target: 5'- gAGGuCCGCGccaGCCUCGagcgcgcccaGGACggCGCCa -3' miRNA: 3'- -UCCcGGCGC---CGGAGCg---------CCUGaaGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 27500 | 0.67 | 0.325767 |
Target: 5'- aAGGGCUGCgcuguaccggcgauuGcGCC-CGCGGGCaggUACCa -3' miRNA: 3'- -UCCCGGCG---------------C-CGGaGCGCCUGaa-GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 23729 | 0.67 | 0.322724 |
Target: 5'- uGGGCgGCGuucGCCUgCGCGGcCUgcUCGCg -3' miRNA: 3'- uCCCGgCGC---CGGA-GCGCCuGA--AGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 22485 | 0.67 | 0.322724 |
Target: 5'- gAGGGCa-CGGUggCGaCGGACggCACCg -3' miRNA: 3'- -UCCCGgcGCCGgaGC-GCCUGaaGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 32047 | 0.67 | 0.31521 |
Target: 5'- gGGGGCggcgaGUGGCCUgggggacagcaaUGCGGACcugaGCCg -3' miRNA: 3'- -UCCCGg----CGCCGGA------------GCGCCUGaag-UGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 881 | 0.67 | 0.31521 |
Target: 5'- --uGCgGCGGCa-CGCGGACgucCACCg -3' miRNA: 3'- uccCGgCGCCGgaGCGCCUGaa-GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 36761 | 0.67 | 0.312242 |
Target: 5'- -cGGCCGcCGGCCUCGCcgucGGCguacuccucggcgUCAUCa -3' miRNA: 3'- ucCCGGC-GCCGGAGCGc---CUGa------------AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 2371 | 0.67 | 0.307829 |
Target: 5'- cGaGGCCGCGGCg-CGCGaGCUcUCGCa -3' miRNA: 3'- uC-CCGGCGCCGgaGCGCcUGA-AGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 48909 | 0.67 | 0.300581 |
Target: 5'- --aGCCGCGccGCCUCGCGccgUUCGCCa -3' miRNA: 3'- uccCGGCGC--CGGAGCGCcugAAGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 44672 | 0.67 | 0.300581 |
Target: 5'- uGGGCC-CGuCCUgGCGGAUgccagCACCc -3' miRNA: 3'- uCCCGGcGCcGGAgCGCCUGaa---GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 21479 | 0.67 | 0.293465 |
Target: 5'- aAGGGCggccugCGCGGCgUgGUGGACUgguUCcCCu -3' miRNA: 3'- -UCCCG------GCGCCGgAgCGCCUGA---AGuGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 33909 | 0.68 | 0.286482 |
Target: 5'- uGGGCCgGUGGCCggGCGGAgagCGuCCa -3' miRNA: 3'- uCCCGG-CGCCGGagCGCCUgaaGU-GG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 19189 | 0.68 | 0.286482 |
Target: 5'- cAGuGGCagGUGGCacgaGCaGGACUUCACCu -3' miRNA: 3'- -UC-CCGg-CGCCGgag-CG-CCUGAAGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 39257 | 0.68 | 0.286482 |
Target: 5'- uGGGCCgcagcaugugcuGCGcGCCUCcucuacggcgcuGCGGugUcUCGCCa -3' miRNA: 3'- uCCCGG------------CGC-CGGAG------------CGCCugA-AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 22590 | 0.68 | 0.286482 |
Target: 5'- uGGGCCGCGGCggagaaaaaGCGGGCggaguUUUACg -3' miRNA: 3'- uCCCGGCGCCGgag------CGCCUG-----AAGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 31691 | 0.68 | 0.282355 |
Target: 5'- gGGGGCCcuUGGCUUCGCucaggguggcaccuuGGGCUUUGCa -3' miRNA: 3'- -UCCCGGc-GCCGGAGCG---------------CCUGAAGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 17057 | 0.68 | 0.27963 |
Target: 5'- --cGCCGuCGGCgUCGCGGGCccggagcgUCAUCu -3' miRNA: 3'- uccCGGC-GCCGgAGCGCCUGa-------AGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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