Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11532 | 3' | -62 | NC_003085.1 | + | 22513 | 0.7 | 0.212693 |
Target: 5'- cGGGCUgGCGcuCCUCGaCGGACUgguaguccggggUCACCu -3' miRNA: 3'- uCCCGG-CGCc-GGAGC-GCCUGA------------AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 25371 | 0.7 | 0.212693 |
Target: 5'- cGGGCaCGCcGaCg-GCGGGCUUCACCg -3' miRNA: 3'- uCCCG-GCGcCgGagCGCCUGAAGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 40765 | 0.7 | 0.212693 |
Target: 5'- uGGGCCucguGUGGCUgacguUgGCGGACggCACCc -3' miRNA: 3'- uCCCGG----CGCCGG-----AgCGCCUGaaGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 22879 | 0.69 | 0.222058 |
Target: 5'- cGGGGCCGUcGCCUCcuggGCGGgagcggccguugccGCUgccgUCGCCa -3' miRNA: 3'- -UCCCGGCGcCGGAG----CGCC--------------UGA----AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 26149 | 0.69 | 0.223183 |
Target: 5'- cGGGCUGCuGGCCaccgacgUCGCGGACccguaugCGuCCg -3' miRNA: 3'- uCCCGGCG-CCGG-------AGCGCCUGaa-----GU-GG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 44852 | 0.69 | 0.223747 |
Target: 5'- cGGcGCCGaguuGcGCCUCgucgGCGGACUaccUCACCg -3' miRNA: 3'- uCC-CGGCg---C-CGGAG----CGCCUGA---AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 30120 | 0.69 | 0.234697 |
Target: 5'- uGGGCCuGCugcaacuugugcuGGCCcuggaagcCGCGGACgacgUCGCCa -3' miRNA: 3'- uCCCGG-CG-------------CCGGa-------GCGCCUGa---AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 24709 | 0.69 | 0.235285 |
Target: 5'- cGGcGGCaucgGCGGCUUCGCGGguGCcaaCACCa -3' miRNA: 3'- -UC-CCGg---CGCCGGAGCGCC--UGaa-GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 2267 | 0.69 | 0.235285 |
Target: 5'- gGGGGCCucgucGCGGacuuCUUCGCGGGCUcCGgCa -3' miRNA: 3'- -UCCCGG-----CGCC----GGAGCGCCUGAaGUgG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 32910 | 0.69 | 0.247318 |
Target: 5'- -cGGCgCGCGGCCUCuCGGGCcccaaucagUCGCg -3' miRNA: 3'- ucCCG-GCGCCGGAGcGCCUGa--------AGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 47396 | 0.68 | 0.253524 |
Target: 5'- aAGGGCgGCGcGCUggagaUgGUGGACaacgUCGCCa -3' miRNA: 3'- -UCCCGgCGC-CGG-----AgCGCCUGa---AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 24877 | 0.68 | 0.259857 |
Target: 5'- --aGCCGCGcGCCgCGaCGGGCUgagcggCACCa -3' miRNA: 3'- uccCGGCGC-CGGaGC-GCCUGAa-----GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 14804 | 0.68 | 0.270257 |
Target: 5'- -aGGCCGacauccuccgcgaGGCCaUCGCGGAgUggugCGCCa -3' miRNA: 3'- ucCCGGCg------------CCGG-AGCGCCUgAa---GUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 40330 | 0.68 | 0.272909 |
Target: 5'- aAGGGCuggCGCGuGCCUCaGUGGGCggugggcaaGCCg -3' miRNA: 3'- -UCCCG---GCGC-CGGAG-CGCCUGaag------UGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 17057 | 0.68 | 0.27963 |
Target: 5'- --cGCCGuCGGCgUCGCGGGCccggagcgUCAUCu -3' miRNA: 3'- uccCGGC-GCCGgAGCGCCUGa-------AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 31691 | 0.68 | 0.282355 |
Target: 5'- gGGGGCCcuUGGCUUCGCucaggguggcaccuuGGGCUUUGCa -3' miRNA: 3'- -UCCCGGc-GCCGGAGCG---------------CCUGAAGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 39257 | 0.68 | 0.286482 |
Target: 5'- uGGGCCgcagcaugugcuGCGcGCCUCcucuacggcgcuGCGGugUcUCGCCa -3' miRNA: 3'- uCCCGG------------CGC-CGGAG------------CGCCugA-AGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 19189 | 0.68 | 0.286482 |
Target: 5'- cAGuGGCagGUGGCacgaGCaGGACUUCACCu -3' miRNA: 3'- -UC-CCGg-CGCCGgag-CG-CCUGAAGUGG- -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 22590 | 0.68 | 0.286482 |
Target: 5'- uGGGCCGCGGCggagaaaaaGCGGGCggaguUUUACg -3' miRNA: 3'- uCCCGGCGCCGgag------CGCCUG-----AAGUGg -5' |
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11532 | 3' | -62 | NC_003085.1 | + | 33909 | 0.68 | 0.286482 |
Target: 5'- uGGGCCgGUGGCCggGCGGAgagCGuCCa -3' miRNA: 3'- uCCCGG-CGCCGGagCGCCUgaaGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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