miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 8970 1.03 0.000608
Target:  5'- aAGGGCCGCGGCC-CGCGGACUUCACCg -3'
miRNA:   3'- -UCCCGGCGCCGGaGCGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 4245 0.76 0.077148
Target:  5'- cGGGCCGCaGcGCUUCGCGcGCUUgGCCu -3'
miRNA:   3'- uCCCGGCG-C-CGGAGCGCcUGAAgUGG- -5'
11532 3' -62 NC_003085.1 + 22994 0.75 0.086124
Target:  5'- ----aCGCGGCCUCGgaGGGCUUCGCCc -3'
miRNA:   3'- ucccgGCGCCGGAGCg-CCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 48688 0.73 0.116199
Target:  5'- uGGGCgcaccguugCGCGGCgUgGCGGACU-CGCCc -3'
miRNA:   3'- uCCCG---------GCGCCGgAgCGCCUGAaGUGG- -5'
11532 3' -62 NC_003085.1 + 17985 0.73 0.118413
Target:  5'- cGGGCCGCagGGCacggagcugcgagagCGCGGACUggCGCCc -3'
miRNA:   3'- uCCCGGCG--CCGga-------------GCGCCUGAa-GUGG- -5'
11532 3' -62 NC_003085.1 + 23900 0.73 0.12263
Target:  5'- uGGGCCGaGGCuCUCGCuGACUUCGgUg -3'
miRNA:   3'- uCCCGGCgCCG-GAGCGcCUGAAGUgG- -5'
11532 3' -62 NC_003085.1 + 24135 0.73 0.12263
Target:  5'- cGaGCCGCGGCUUCcCGcGCUUCGCCa -3'
miRNA:   3'- uCcCGGCGCCGGAGcGCcUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 23427 0.73 0.125968
Target:  5'- uGGGGCUGC-GCCUCgGCGGccggcggcGCUUgGCCg -3'
miRNA:   3'- -UCCCGGCGcCGGAG-CGCC--------UGAAgUGG- -5'
11532 3' -62 NC_003085.1 + 25493 0.73 0.125968
Target:  5'- cAGGGagaaucccaugCGUGGUCUCGCGGAUgagUCGCUg -3'
miRNA:   3'- -UCCCg----------GCGCCGGAGCGCCUGa--AGUGG- -5'
11532 3' -62 NC_003085.1 + 7448 0.73 0.129391
Target:  5'- cGGGcGCCGuCGGCCUCGUacuGGAgCggCGCCc -3'
miRNA:   3'- -UCC-CGGC-GCCGGAGCG---CCU-GaaGUGG- -5'
11532 3' -62 NC_003085.1 + 2434 0.72 0.136494
Target:  5'- cGcGCCGCGGCCUCGC--ACUgCGCCu -3'
miRNA:   3'- uCcCGGCGCCGGAGCGccUGAaGUGG- -5'
11532 3' -62 NC_003085.1 + 10237 0.72 0.140179
Target:  5'- cGGGuCCGCccGGuCCUCGCGGuACUcccCGCCg -3'
miRNA:   3'- uCCC-GGCG--CC-GGAGCGCC-UGAa--GUGG- -5'
11532 3' -62 NC_003085.1 + 7141 0.72 0.147823
Target:  5'- uGGGGCCacugaagaGCaugGGCCUuucgCGCGGGCUcaUCGCCc -3'
miRNA:   3'- -UCCCGG--------CG---CCGGA----GCGCCUGA--AGUGG- -5'
11532 3' -62 NC_003085.1 + 20360 0.72 0.147823
Target:  5'- uGGGCa-CGGCCU--UGGGCUUCGCCu -3'
miRNA:   3'- uCCCGgcGCCGGAgcGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 21943 0.72 0.151785
Target:  5'- gAGGGaCaCGGCCUCG-GG-CUUCACCu -3'
miRNA:   3'- -UCCCgGcGCCGGAGCgCCuGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 15326 0.72 0.151785
Target:  5'- -cGGCCGCGGCCUC-CGGG--UCGuCCu -3'
miRNA:   3'- ucCCGGCGCCGGAGcGCCUgaAGU-GG- -5'
11532 3' -62 NC_003085.1 + 34618 0.72 0.153397
Target:  5'- cGGGCCggcugGUGGCgCUCGCGGccGCUguguugcugacgcugUCGCCg -3'
miRNA:   3'- uCCCGG-----CGCCG-GAGCGCC--UGA---------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 41560 0.71 0.160002
Target:  5'- cGGGCCGguagcaGcGCUggCGCGGuACUUCACCc -3'
miRNA:   3'- uCCCGGCg-----C-CGGa-GCGCC-UGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 14136 0.7 0.196995
Target:  5'- gAGGcGCuCGCagauGGCCUCGaCGGACa-CGCCg -3'
miRNA:   3'- -UCC-CG-GCG----CCGGAGC-GCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 23781 0.7 0.207345
Target:  5'- cGGGGCCGUcuugacggaggaGGCUgcugCGCGGGCccgCugCg -3'
miRNA:   3'- -UCCCGGCG------------CCGGa---GCGCCUGaa-GugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.