miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 36761 0.67 0.312242
Target:  5'- -cGGCCGcCGGCCUCGCcgucGGCguacuccucggcgUCAUCa -3'
miRNA:   3'- ucCCGGC-GCCGGAGCGc---CUGa------------AGUGG- -5'
11532 3' -62 NC_003085.1 + 31691 0.68 0.282355
Target:  5'- gGGGGCCcuUGGCUUCGCucaggguggcaccuuGGGCUUUGCa -3'
miRNA:   3'- -UCCCGGc-GCCGGAGCG---------------CCUGAAGUGg -5'
11532 3' -62 NC_003085.1 + 19189 0.68 0.286482
Target:  5'- cAGuGGCagGUGGCacgaGCaGGACUUCACCu -3'
miRNA:   3'- -UC-CCGg-CGCCGgag-CG-CCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 22590 0.68 0.286482
Target:  5'- uGGGCCGCGGCggagaaaaaGCGGGCggaguUUUACg -3'
miRNA:   3'- uCCCGGCGCCGgag------CGCCUG-----AAGUGg -5'
11532 3' -62 NC_003085.1 + 39257 0.68 0.286482
Target:  5'- uGGGCCgcagcaugugcuGCGcGCCUCcucuacggcgcuGCGGugUcUCGCCa -3'
miRNA:   3'- uCCCGG------------CGC-CGGAG------------CGCCugA-AGUGG- -5'
11532 3' -62 NC_003085.1 + 21479 0.67 0.293465
Target:  5'- aAGGGCggccugCGCGGCgUgGUGGACUgguUCcCCu -3'
miRNA:   3'- -UCCCG------GCGCCGgAgCGCCUGA---AGuGG- -5'
11532 3' -62 NC_003085.1 + 44672 0.67 0.300581
Target:  5'- uGGGCC-CGuCCUgGCGGAUgccagCACCc -3'
miRNA:   3'- uCCCGGcGCcGGAgCGCCUGaa---GUGG- -5'
11532 3' -62 NC_003085.1 + 48909 0.67 0.300581
Target:  5'- --aGCCGCGccGCCUCGCGccgUUCGCCa -3'
miRNA:   3'- uccCGGCGC--CGGAGCGCcugAAGUGG- -5'
11532 3' -62 NC_003085.1 + 2371 0.67 0.307829
Target:  5'- cGaGGCCGCGGCg-CGCGaGCUcUCGCa -3'
miRNA:   3'- uC-CCGGCGCCGgaGCGCcUGA-AGUGg -5'
11532 3' -62 NC_003085.1 + 40330 0.68 0.272909
Target:  5'- aAGGGCuggCGCGuGCCUCaGUGGGCggugggcaaGCCg -3'
miRNA:   3'- -UCCCG---GCGC-CGGAG-CGCCUGaag------UGG- -5'
11532 3' -62 NC_003085.1 + 14804 0.68 0.270257
Target:  5'- -aGGCCGacauccuccgcgaGGCCaUCGCGGAgUggugCGCCa -3'
miRNA:   3'- ucCCGGCg------------CCGG-AGCGCCUgAa---GUGG- -5'
11532 3' -62 NC_003085.1 + 24709 0.69 0.235285
Target:  5'- cGGcGGCaucgGCGGCUUCGCGGguGCcaaCACCa -3'
miRNA:   3'- -UC-CCGg---CGCCGGAGCGCC--UGaa-GUGG- -5'
11532 3' -62 NC_003085.1 + 4245 0.76 0.077148
Target:  5'- cGGGCCGCaGcGCUUCGCGcGCUUgGCCu -3'
miRNA:   3'- uCCCGGCG-C-CGGAGCGCcUGAAgUGG- -5'
11532 3' -62 NC_003085.1 + 48688 0.73 0.116199
Target:  5'- uGGGCgcaccguugCGCGGCgUgGCGGACU-CGCCc -3'
miRNA:   3'- uCCCG---------GCGCCGgAgCGCCUGAaGUGG- -5'
11532 3' -62 NC_003085.1 + 17985 0.73 0.118413
Target:  5'- cGGGCCGCagGGCacggagcugcgagagCGCGGACUggCGCCc -3'
miRNA:   3'- uCCCGGCG--CCGga-------------GCGCCUGAa-GUGG- -5'
11532 3' -62 NC_003085.1 + 25493 0.73 0.125968
Target:  5'- cAGGGagaaucccaugCGUGGUCUCGCGGAUgagUCGCUg -3'
miRNA:   3'- -UCCCg----------GCGCCGGAGCGCCUGa--AGUGG- -5'
11532 3' -62 NC_003085.1 + 25371 0.7 0.212693
Target:  5'- cGGGCaCGCcGaCg-GCGGGCUUCACCg -3'
miRNA:   3'- uCCCG-GCGcCgGagCGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 40765 0.7 0.212693
Target:  5'- uGGGCCucguGUGGCUgacguUgGCGGACggCACCc -3'
miRNA:   3'- uCCCGG----CGCCGG-----AgCGCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 26149 0.69 0.223183
Target:  5'- cGGGCUGCuGGCCaccgacgUCGCGGACccguaugCGuCCg -3'
miRNA:   3'- uCCCGGCG-CCGG-------AGCGCCUGaa-----GU-GG- -5'
11532 3' -62 NC_003085.1 + 2267 0.69 0.235285
Target:  5'- gGGGGCCucgucGCGGacuuCUUCGCGGGCUcCGgCa -3'
miRNA:   3'- -UCCCGG-----CGCC----GGAGCGCCUGAaGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.