miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11532 3' -62 NC_003085.1 + 374 0.66 0.354105
Target:  5'- gGGGGCaGCGGa--CGgGGACUcggcggUCACCu -3'
miRNA:   3'- -UCCCGgCGCCggaGCgCCUGA------AGUGG- -5'
11532 3' -62 NC_003085.1 + 620 0.66 0.36228
Target:  5'- uGGGCgCGCucgaGGCUggCGCGGACcUCGUCg -3'
miRNA:   3'- uCCCG-GCG----CCGGa-GCGCCUGaAGUGG- -5'
11532 3' -62 NC_003085.1 + 696 0.67 0.330371
Target:  5'- gAGGuCCGCGccaGCCUCGagcgcgcccaGGACggCGCCa -3'
miRNA:   3'- -UCCcGGCGC---CGGAGCg---------CCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 881 0.67 0.31521
Target:  5'- --uGCgGCGGCa-CGCGGACgucCACCg -3'
miRNA:   3'- uccCGgCGCCGgaGCGCCUGaa-GUGG- -5'
11532 3' -62 NC_003085.1 + 2205 0.66 0.346062
Target:  5'- gGGGGCCGCcGuCCUCggacguguacuuGUGGGCgccgauggCGCCg -3'
miRNA:   3'- -UCCCGGCGcC-GGAG------------CGCCUGaa------GUGG- -5'
11532 3' -62 NC_003085.1 + 2267 0.69 0.235285
Target:  5'- gGGGGCCucgucGCGGacuuCUUCGCGGGCUcCGgCa -3'
miRNA:   3'- -UCCCGG-----CGCC----GGAGCGCCUGAaGUgG- -5'
11532 3' -62 NC_003085.1 + 2371 0.67 0.307829
Target:  5'- cGaGGCCGCGGCg-CGCGaGCUcUCGCa -3'
miRNA:   3'- uC-CCGGCGCCGgaGCGCcUGA-AGUGg -5'
11532 3' -62 NC_003085.1 + 2434 0.72 0.136494
Target:  5'- cGcGCCGCGGCCUCGC--ACUgCGCCu -3'
miRNA:   3'- uCcCGGCGCCGGAGCGccUGAaGUGG- -5'
11532 3' -62 NC_003085.1 + 4245 0.76 0.077148
Target:  5'- cGGGCCGCaGcGCUUCGCGcGCUUgGCCu -3'
miRNA:   3'- uCCCGGCG-C-CGGAGCGCcUGAAgUGG- -5'
11532 3' -62 NC_003085.1 + 7141 0.72 0.147823
Target:  5'- uGGGGCCacugaagaGCaugGGCCUuucgCGCGGGCUcaUCGCCc -3'
miRNA:   3'- -UCCCGG--------CG---CCGGA----GCGCCUGA--AGUGG- -5'
11532 3' -62 NC_003085.1 + 7448 0.73 0.129391
Target:  5'- cGGGcGCCGuCGGCCUCGUacuGGAgCggCGCCc -3'
miRNA:   3'- -UCC-CGGC-GCCGGAGCG---CCU-GaaGUGG- -5'
11532 3' -62 NC_003085.1 + 8554 0.66 0.370585
Target:  5'- cGGGCCaGC-GCCUCGgCGGcCUUCugGCg -3'
miRNA:   3'- uCCCGG-CGcCGGAGC-GCCuGAAG--UGg -5'
11532 3' -62 NC_003085.1 + 8970 1.03 0.000608
Target:  5'- aAGGGCCGCGGCC-CGCGGACUUCACCg -3'
miRNA:   3'- -UCCCGGCGCCGGaGCGCCUGAAGUGG- -5'
11532 3' -62 NC_003085.1 + 9140 0.66 0.379019
Target:  5'- uGGGa-GCGGCacCUgGCGGAgcUCGCCg -3'
miRNA:   3'- uCCCggCGCCG--GAgCGCCUgaAGUGG- -5'
11532 3' -62 NC_003085.1 + 10237 0.72 0.140179
Target:  5'- cGGGuCCGCccGGuCCUCGCGGuACUcccCGCCg -3'
miRNA:   3'- uCCC-GGCG--CC-GGAGCGCC-UGAa--GUGG- -5'
11532 3' -62 NC_003085.1 + 10670 0.66 0.36228
Target:  5'- cGGGGCUGcCGGCg-UGCuGGACa-CACCa -3'
miRNA:   3'- -UCCCGGC-GCCGgaGCG-CCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 12035 0.66 0.351679
Target:  5'- cGGuGCUGCGcgacuucgugcgccGCUUCGCGGGCU--ACCc -3'
miRNA:   3'- uCC-CGGCGC--------------CGGAGCGCCUGAagUGG- -5'
11532 3' -62 NC_003085.1 + 14136 0.7 0.196995
Target:  5'- gAGGcGCuCGCagauGGCCUCGaCGGACa-CGCCg -3'
miRNA:   3'- -UCC-CG-GCG----CCGGAGC-GCCUGaaGUGG- -5'
11532 3' -62 NC_003085.1 + 14497 0.66 0.379019
Target:  5'- gAGGGCCaGC--CCUCGCGGAgCaUCuCCa -3'
miRNA:   3'- -UCCCGG-CGccGGAGCGCCU-GaAGuGG- -5'
11532 3' -62 NC_003085.1 + 14804 0.68 0.270257
Target:  5'- -aGGCCGacauccuccgcgaGGCCaUCGCGGAgUggugCGCCa -3'
miRNA:   3'- ucCCGGCg------------CCGG-AGCGCCUgAa---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.