miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11538 3' -52.3 NC_003085.1 + 11481 1.08 0.001513
Target:  5'- gAAACACGGAUACUGCACGCACCACACg -3'
miRNA:   3'- -UUUGUGCCUAUGACGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 4949 0.75 0.321566
Target:  5'- ---gGCGGGUGCUggGCAC-CACCGCGCa -3'
miRNA:   3'- uuugUGCCUAUGA--CGUGcGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 28704 0.75 0.321566
Target:  5'- -cGCGCGGA-GCUGCGCGCugGCCcuGCGCu -3'
miRNA:   3'- uuUGUGCCUaUGACGUGCG--UGG--UGUG- -5'
11538 3' -52.3 NC_003085.1 + 45738 0.73 0.373883
Target:  5'- -uGCGCGGGUGCUGCcugcguCGuCACCACcaGCa -3'
miRNA:   3'- uuUGUGCCUAUGACGu-----GC-GUGGUG--UG- -5'
11538 3' -52.3 NC_003085.1 + 21680 0.73 0.39256
Target:  5'- -cGCGCGGGU-C-GCuCGCGCCACGCa -3'
miRNA:   3'- uuUGUGCCUAuGaCGuGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 17013 0.73 0.411832
Target:  5'- gAAGCGCGGAUgggcGCUGCucGCGUAUgACGCc -3'
miRNA:   3'- -UUUGUGCCUA----UGACG--UGCGUGgUGUG- -5'
11538 3' -52.3 NC_003085.1 + 5851 0.73 0.411832
Target:  5'- --cCACGGcGUAgaGCACGCGCCGCuCa -3'
miRNA:   3'- uuuGUGCC-UAUgaCGUGCGUGGUGuG- -5'
11538 3' -52.3 NC_003085.1 + 41470 0.72 0.462467
Target:  5'- gGGGCGCGGGUGaaGUAcCGCGCCAgCGCu -3'
miRNA:   3'- -UUUGUGCCUAUgaCGU-GCGUGGU-GUG- -5'
11538 3' -52.3 NC_003085.1 + 1652 0.72 0.462467
Target:  5'- cGGCACGcGUAC-GC-CGCGCCGCACu -3'
miRNA:   3'- uUUGUGCcUAUGaCGuGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12830 0.71 0.482552
Target:  5'- ---gGCGGAUgcGCUGUugGCcgccaauGCCACGCa -3'
miRNA:   3'- uuugUGCCUA--UGACGugCG-------UGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 22511 0.71 0.483621
Target:  5'- cGACAuCGGAaGCcGCACgaaGCGCCGCGCg -3'
miRNA:   3'- uUUGU-GCCUaUGaCGUG---CGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 15111 0.71 0.494371
Target:  5'- cGACgaGCGGAUGgaGCGcCGCGCCGCGu -3'
miRNA:   3'- uUUG--UGCCUAUgaCGU-GCGUGGUGUg -5'
11538 3' -52.3 NC_003085.1 + 40700 0.71 0.505229
Target:  5'- cGACGucCGGGUGCUGgACGCGCCGg-- -3'
miRNA:   3'- uUUGU--GCCUAUGACgUGCGUGGUgug -5'
11538 3' -52.3 NC_003085.1 + 38937 0.7 0.538382
Target:  5'- cGAACAU-GAUGCUGUcgccGCGCGCCGuCGCa -3'
miRNA:   3'- -UUUGUGcCUAUGACG----UGCGUGGU-GUG- -5'
11538 3' -52.3 NC_003085.1 + 37876 0.7 0.560894
Target:  5'- cAGACGuCGGAggUGCUgGUggGCACCACGCc -3'
miRNA:   3'- -UUUGU-GCCU--AUGA-CGugCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 37138 0.7 0.560894
Target:  5'- cGGGCACGGcgACgGCGgGCACcCugGCg -3'
miRNA:   3'- -UUUGUGCCuaUGaCGUgCGUG-GugUG- -5'
11538 3' -52.3 NC_003085.1 + 3409 0.7 0.572248
Target:  5'- gAAGgGCGGGUGCaGC-CGUAUCGCGCc -3'
miRNA:   3'- -UUUgUGCCUAUGaCGuGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 12335 0.7 0.583656
Target:  5'- cGAACcUGGGcaaggGCACGCGCCACAUg -3'
miRNA:   3'- -UUUGuGCCUauga-CGUGCGUGGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 42822 0.7 0.583656
Target:  5'- -uGCACGGGUccgGC-GCugGCGgCGCGCg -3'
miRNA:   3'- uuUGUGCCUA---UGaCGugCGUgGUGUG- -5'
11538 3' -52.3 NC_003085.1 + 29200 0.69 0.595108
Target:  5'- aGGACGCGGA-GC-GCACGCGCC-UGCu -3'
miRNA:   3'- -UUUGUGCCUaUGaCGUGCGUGGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.